Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   0.85 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   4.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.9  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
 Frame = +2

Query: 83  AANFASTHSPDTPTAATHHVSRSPTGEAIDVAASAIQ*HGPCVEHYTKTPHTK-KCRV*L 259
           AA     H P  P   THH +R        V  + I    P +        T+    + L
Sbjct: 154 AATSLPLHYPPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPPVTQTQLPLNLGL 213

Query: 260 G*KFRGSFHSQVTANPRFVPL 322
              ++G F     ++PR  P+
Sbjct: 214 DFPYQGKFEVPTKSSPRSSPV 234


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 173 VAASAIQ*HGPCVEHYTKTPHTKKCRV*LG*KFR 274
           V  S +  H  C E+    P + KC   LG K R
Sbjct: 577 VCRSGLSYHLSCAENMMFDPMSGKCEYSLGEKCR 610


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 193 LYRAGGDVNSLPSWGTRHV 137
           L RAGG VNSL    TR V
Sbjct: 210 LSRAGGLVNSLYQNATRKV 228


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -1

Query: 468 YCKNRINIYINYF 430
           +C++R+N Y+ Y+
Sbjct: 113 FCRDRVNPYLFYY 125


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 261 DKNSAGVFTLR 293
           D+  AGVFTLR
Sbjct: 952 DQTEAGVFTLR 962


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,597
Number of Sequences: 336
Number of extensions: 2725
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)