Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   1.1  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   2.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   2.7  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   2.7  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   8.1  

>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 108 LRIPLRRRPITCLVPQLGRLLTSPPARYSDTDHALSITRKHRTLKNVG 251
           +R  L  + IT L+P+   L+++    Y+D  H+LS     +  + VG
Sbjct: 309 IRFELPLKNITSLLPKQDPLISTEILVYNDLSHSLSNAESRKLCEAVG 356


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 102 HTLRIPLRRRPITCLVPQLGRLLTSPPARYSDTDHALSITRKHR 233
           H + + L +  + CLV  LG L  S    Y   DH L +    R
Sbjct: 165 HPIDVSLSKEGLPCLVDSLGLLHCSIIHSYQVQDHILFVANVER 208


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 105 TLRIPLRRRPITCLVPQLGRLLTSPPARYSDTDHALSIT 221
           T R  + RRP + +  Q G L+ +PP R S  +    +T
Sbjct: 44  TARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVT 82


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 340 KVQVLPKWHEPRVGRYLRVKTPAE 269
           K+ +LPKW    + R + ++ PA+
Sbjct: 450 KIPILPKWLSNHIPREISIRNPAQ 473


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 105 TLRIPLRRRPITCLVPQLGRLLTSPPARYSDTDHALSITRKHR 233
           +LR+ L R   TCLVP L       P ++   D+ +++T+  R
Sbjct: 109 SLRVQLSRLYPTCLVPPL-------PDKHKIMDYLINVTKNQR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,587
Number of Sequences: 5004
Number of extensions: 42678
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)