Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598...    31   0.38 
08_02_0979 - 23252004-23252038,23253874-23254624                       29   1.5  
04_04_0449 - 25318322-25318618,25318839-25319234                       29   1.5  
01_06_0710 + 31384519-31385493                                         29   2.6  
07_03_1067 + 23728642-23728690,23728832-23729010                       28   3.5  
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724...    28   3.5  
02_01_0306 - 2052178-2052254,2053601-2053679,2054888-2054953,205...    27   6.1  
02_05_0607 - 30315982-30316215,30316688-30316831,30316902-303169...    27   8.1  

>07_01_0776 +
           5983684-5983857,5983962-5984072,5984151-5984302,
           5984403-5984460,5984568-5984616,5984714-5984958,
           5985129-5985206,5986016-5986246
          Length = 365

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 289 SGNGQPEVRATLVTLVPYVAEHSP-PKYGEAVKALPVNS 402
           SGN   E   +  TLVPY A  SP P  G +   LPV++
Sbjct: 175 SGNTSAEGEPSQATLVPYAAVESPYPLKGRSASKLPVSA 213


>08_02_0979 - 23252004-23252038,23253874-23254624
          Length = 261

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 408 ATAVDRKGLYSFTVLWGRVLSHIR 337
           A+A  R GL+SF  L G VLSH+R
Sbjct: 27  ASASPRHGLHSFHALAGAVLSHLR 50


>04_04_0449 - 25318322-25318618,25318839-25319234
          Length = 230

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 25/80 (31%), Positives = 27/80 (33%)
 Frame = +3

Query: 36  MHPSAAETAFPAAGDRRLTLLPHTLRIPLRRRPITCLVPQLGRLLTSPPARYSDTDHALS 215
           M   AA  AF  A       L   L  P R RP  C  P    LL  P     D D A  
Sbjct: 1   MLSQAAAVAFSCAAAALPRALALLLAPPARHRPQRCRCPAHRLLLPQPQRHADDADDAAP 60

Query: 216 ITRKHRTLKNVGFS*DKNSA 275
            T   R  +   FS  +  A
Sbjct: 61  PTAAARPRRPRPFSRSRRRA 80


>01_06_0710 + 31384519-31385493
          Length = 324

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 63  FPAAGDRRLTLLPHTLRIPLRRRPITCLVPQLGRLLTSPPARYSDTDHALSITRKHRTLK 242
           +   GDR L  L + +       PI    P +  L T+PP   SDTD       + R  +
Sbjct: 146 YSVGGDRDLQTLRNLIPFSRAASPIPVPAPFVPALKTTPPLLPSDTDEEKRPRSRRRRRR 205

Query: 243 NVG 251
           + G
Sbjct: 206 SGG 208


>07_03_1067 + 23728642-23728690,23728832-23729010
          Length = 75

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 164 PPQLGNETRDGSPP*GYP 111
           PPQ G   +DG PP GYP
Sbjct: 13  PPQQGYPGKDGYPPPGYP 30


>06_03_0975 -
           26471438-26472109,26472189-26472284,26472372-26472482,
           26472494-26472530,26472566-26472576,26472674-26473050,
           26474310-26474895
          Length = 629

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 18  LINRLSMHPSAAETAFPAAGDRRLTLLPHTLRIPLRRRP---ITCLVP 152
           L + L+  P +   A  AA D    L PH    PLRRR    + C VP
Sbjct: 7   LCHLLAAPPPSTSAAADAAHDHAGALAPHRRASPLRRRGRLFLACRVP 54


>02_01_0306 -
           2052178-2052254,2053601-2053679,2054888-2054953,
           2055042-2055246,2055327-2055331
          Length = 143

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 364 LGASAQPHKVQVLPKWHEPRVGR 296
           LG  AQ  +V  +P WH P  GR
Sbjct: 94  LGYQAQREEVAPVPMWHSPEGGR 116


>02_05_0607 -
           30315982-30316215,30316688-30316831,30316902-30316989,
           30317829-30317934,30318398-30318552,30318630-30318699,
           30319940-30320106,30320827-30320894,30322764-30322867,
           30322937-30323107,30323113-30323238,30323496-30323663,
           30323725-30323908,30324139-30324534
          Length = 726

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 3   TRGFFLINRLSMHPSAAETAFPAAGDRRLTLLPHTLRIPLR 125
           T  F L    S HP +A  +       R  LLP  LR+P R
Sbjct: 20  TATFLLSPSNSKHPHSASASASFPSTARRILLPSPLRVPAR 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,543
Number of Sequences: 37544
Number of extensions: 315114
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)