Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)                   29   2.1  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81)               28   3.6  
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)              27   6.3  
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)           27   6.3  
SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)                     27   6.3  
SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   8.3  
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                27   8.3  
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   8.3  
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   8.3  
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   8.3  
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)                   27   8.3  
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)                   27   8.3  
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)                   27   8.3  
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)             27   8.3  

>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 269

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P +SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 219 PVFSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 258


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 96   LPHTLRIPLRRRPITCLVPQLGRLLTSPPAR 188
            +PHT+  P   RP +CL  Q    LTS PA+
Sbjct: 2039 VPHTMGNPTTPRPPSCLTQQTS-TLTSTPAK 2068


>SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81)
          Length = 316

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 275 RGIFILAKPYIF*CAVFSCNAQRMVRVTVSRWRRR 171
           RG+++L       C V SC  +   RV +S WR R
Sbjct: 154 RGVYVLCTVS---CRVISCRVRTAYRVVISSWRVR 185


>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
          Length = 389

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGAS-AQPHKVQVLPKWHEPRVGR 296
           PSY   P G    +    +S ++ H VQVLP  H+PR  R
Sbjct: 274 PSYQYLPNGCTGFYPDYRSSLSKAHLVQVLPGQHKPRKPR 313


>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
          Length = 279

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 164 PPQLGNETRDGSPP*GYPESVWKQS*PPVP 75
           PP L ++T   SPP   P S   QS PP P
Sbjct: 98  PPSLSSQTSSSSPP---PSSSSSQSLPPPP 124


>SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)
          Length = 120

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 268 IPREFSLSGNGQPEVRATLVTLVPYVAEHSPPKYGEAVKALPVN 399
           IP+   L  +  P  RA +   +  +A HSP  Y + +KA   N
Sbjct: 76  IPQLVELLTDSVPRTRANVAGALGNLARHSPALYPQLIKAQAPN 119


>SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 100

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 50  PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 89


>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 287

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 237 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 276


>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 209 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 248


>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 214

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 164 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 203


>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 240

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 190 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 229


>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 612 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 651


>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 240

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 190 PVSSCMPDASSQAPQPLPEPKRPTRARTRPKRYEPETGNW 229


>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
          Length = 1213

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412  PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
            P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 1163 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 1202


>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1269

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412  PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
            P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 1219 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 1258


>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
          Length = 1272

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412  PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
            P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 1222 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 1261


>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 625 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 664


>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
          Length = 848

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 798 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 837


>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
          Length = 500

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 412 PSYSC*PEGPLQLHRTLGASAQPHKVQVLPKWHEPRVGRY 293
           P  SC P+   Q  + L    +P + +  PK +EP  G +
Sbjct: 450 PVSSCMPDASSQAPQPLPEPRRPTRARTRPKRYEPETGNW 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,178
Number of Sequences: 59808
Number of extensions: 345268
Number of successful extensions: 756
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)