Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    27   7.3  

>Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical
           protein C34E11.1 protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 384 GPSGQQL*LGLKKITKNNLCRYLYDFYNMY 473
           GP+G Q+    KKI +    RY+ DFYN+Y
Sbjct: 56  GPTGPQM----KKICEYTRSRYMEDFYNVY 81


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 77  GQAANFASTHSPDTPTAATHHVSRSPTGEAIDVAASA 187
           G  ++ A++ S  TP++++HH   SP       A SA
Sbjct: 47  GATSSSAASSSTSTPSSSSHHKKSSPPHHQKSAAPSA 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,733,488
Number of Sequences: 27780
Number of extensions: 250741
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)