Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 81  RRLTLLPHTLRIPLRRRPITCLVPQLGRLLTSPPARYSDTDHALSIT 221
           R +T LP T       R +    P   +  T P + Y  +DH  +IT
Sbjct: 227 RAVTKLPDTSMAKSFVRKVHATKPPKPQTKTKPTSPYHVSDHKAAIT 273


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
 Frame = +2

Query: 38  ASQXXXXXXXXXXGQAANFASTHSPDTPTAAT--HHVSRSPTGEAIDVAAS 184
           AS             A N+A  H+  +PT ++  H  S + T  A    +S
Sbjct: 37  ASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSS 87


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 373 HRTLGASAQPHKVQVLPKWHEPRVGRYLRVKTPAEF 266
           HR+  +S +   +Q  P+WH     + +   TPA F
Sbjct: 600 HRS--SSTKGITIQEPPQWHTRSTEKRVSAGTPAAF 633


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 124 GGDPSRVSFPNW 159
           GG P    +PNW
Sbjct: 104 GGSPKLTPYPNW 115


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 300 PTRGSCHFGNTCTLCG*ALAPKVR*SCK 383
           P+ G  H G+T T  G    P V  SCK
Sbjct: 115 PSPGMGHMGHTPTPNGHPSTPIVYASCK 142


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 352 HSPPKYGEAVKA 387
           HSP  YG+A+ A
Sbjct: 604 HSPTMYGDALNA 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,992
Number of Sequences: 438
Number of extensions: 2998
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)