Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA...    27   6.8  
At5g01210.1 68418.m00026 transferase family protein contains Pfa...    27   9.0  

>At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA) /
           sigma factor 1 (SIG1) identical to sigma factor SigA
           [Arabidopsis thaliana] GI:5478439, sigma factor 1
           [Arabidopsis thaliana] GI:2353171, plastid RNA
           polymerase sigma-subunit [Arabidopsis thaliana]
           GI:2398851; contains Pfam profiles PF04545: Sigma-70,
           region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
           region 2
          Length = 502

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 77  GQAANFASTHSPDTPTAATHHVSRSPTGEAIDVAAS 184
           G  A  AS +SP  P++  H  S     E++DVA++
Sbjct: 48  GITAKKASNYSPSFPSSNRHTQSAKALKESVDVAST 83


>At5g01210.1 68418.m00026 transferase family protein contains Pfam
           profile PF02458 transferase family
          Length = 475

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 108 LRIPLRRRP-ITCLVPQLGRLLTSPPARYSDTDHALSITR 224
           LR+ +   P ++C   Q G LLTSPP  +S  D   S+ R
Sbjct: 25  LRLSVSDLPMLSCHYIQKGVLLTSPPPSFSFDDLVSSLRR 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,694
Number of Sequences: 28952
Number of extensions: 237664
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)