Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D15
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 199 1e-52
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 108 3e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 4e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 4e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 3e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 5e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 3e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.061
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.75
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 1.3
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 27 1.3
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.3
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 3.0
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.0
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.3
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 24 7.0
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 7.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 7.0
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 24 9.3
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 9.3
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.3
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 24 9.3
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 24 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 199 bits (486), Expect = 1e-52
Identities = 87/93 (93%), Positives = 91/93 (97%)
Frame = +2
Query: 101 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 379
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNEL
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNEL 94
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 108 bits (259), Expect = 3e-25
Identities = 45/86 (52%), Positives = 63/86 (73%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 299 KYPIEHGIVTNWDDMEKIWHHTFYNE 376
+ PIE GI+ NW DME+IW + + ++
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQ 97
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.5 bits (217), Expect = 4e-20
Identities = 42/93 (45%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Frame = +2
Query: 107 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 280
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 379
R +L +KYP+E+GI+ ++++M ++W +TF+ +L
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKL 94
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.4 bits (135), Expect = 4e-10
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 247
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 248 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 379
D ++G++A K +L YPI HG + NWD ME+ W + + L
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYL 117
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 55.2 bits (127), Expect = 3e-09
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +2
Query: 77 PTD*FTMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 256
PT F ++ LV+DNGS +AG+ G+ P+ VF ++V R R + + + +
Sbjct: 14 PTPSFQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTL 68
Query: 257 VGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTF 367
VG++ + G ++ + P E +++NWD ME++ +TF
Sbjct: 69 VGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF 106
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 48.0 bits (109), Expect = 5e-07
Identities = 29/92 (31%), Positives = 47/92 (51%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 283
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 284 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 379
G + +K I +G V NWD +W + +L
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQL 92
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 45.6 bits (103), Expect = 3e-06
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 283
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 284 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 379
I + +K +GI+ +W+ W +L
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKL 95
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.061
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 164 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 307
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.75
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 261 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 100
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 1.3
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 299 KYPIEH--GIVTNWDDMEKIW 355
++ H G + +W +W
Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 8 GPAYISHGLEPLRILSIFTLSKLPT 82
G AY++ GL P + + FTLS L T
Sbjct: 194 GVAYLAAGLSPQQAVIFFTLSTLKT 218
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 305 PIEHGIVTNWDDMEKIWHHTF 367
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 111 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 203
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 224 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 310
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 5.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 131 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 283
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 24.2 bits (50), Expect = 7.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 286 YPHTQIPHRTRHRHQLGRYG 345
Y + + PH+ +H LG YG
Sbjct: 307 YGNPEHPHQRKHAFDLGEYG 326
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 7.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 151 FAHSGPIVYDQRGNFLV 101
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 207 RPTIEGNTARGASSPAKPALHIPDPLSTTNAATS 106
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 319 AVFDGVFECEDTPLALCLI--TYVGVLLTHADH 227
+V D +FEC D P+ + +G+ H +H
Sbjct: 298 SVLDALFECFDVPVVQYMYQENIIGICNEHFEH 330
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 277 QEGYPHTQIPHRTRHRH 327
Q +PHT+ PH H H
Sbjct: 167 QHHHPHTRPPHHPPHPH 183
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 9.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 371 CRRCDARSSPYRPSW*RCRV 312
C+ CD + YR S +CRV
Sbjct: 161 CQNCDILNYSYRESCFKCRV 180
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 21 FLTVWNRCGYCQFSRYLNYLPTNSQC 98
F +W +C CQ S + + + T+ C
Sbjct: 1033 FARLWTQCQRCQGSMHQDVICTSRDC 1058
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 333 QLVTMPCSMGYLSVRIPLLLCASSPT*ESF 244
+L+ MP S + R P L+C + T E+F
Sbjct: 501 KLLVMPISSFHCVQRFPDLVCVQTSTAETF 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,467
Number of Sequences: 5004
Number of extensions: 33285
Number of successful extensions: 102
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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