Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D14
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   134   4e-33
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   134   5e-33
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    24   8.4  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    24   8.4  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  134 bits (325), Expect = 4e-33
 Identities = 58/90 (64%), Positives = 72/90 (80%)
 Frame = -3

Query: 419 RFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNR 240
           RFNGGVGR AQ K+FG TQ RWP KS +F   LL+NAE+NA+ KGLD+D+L+I H+QVN 
Sbjct: 62  RFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNA 121

Query: 239 APCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           AP  RRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct: 122 APKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  134 bits (324), Expect = 5e-33
 Identities = 58/90 (64%), Positives = 71/90 (78%)
 Frame = -3

Query: 419 RFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNR 240
           RFNGGVGR AQ K+FG TQ RWP KS  F   LL+NAE+NA+ KGLD+D+L+I H+QVN 
Sbjct: 62  RFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNA 121

Query: 239 APCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           AP  RRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct: 122 APKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 308 ESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 192
           E ++ YKG D+D  V+  +   +   ++R T  ++   N
Sbjct: 34  EESSSYKGQDIDTSVLYTLSKRKPALVKRSTDASYAPFN 72


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 308 ESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 192
           E ++ YKG D+D  V+  +   +   ++R T  ++   N
Sbjct: 34  EESSSYKGQDIDTSVLYTLSKRKPALVKRSTDASYAPFN 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,635
Number of Sequences: 5004
Number of extensions: 20090
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)