Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D14
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   136   7e-33
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   135   1e-32
01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783...    42   3e-04
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   3.5  
04_04_1362 + 32897581-32897925,32897979-32897984                       27   4.6  
03_01_0427 + 3296717-3296861,3296966-3297210                           27   4.6  
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362...    27   8.1  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  136 bits (329), Expect = 7e-33
 Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
 Frame = -3

Query: 419 RFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVN 243
           R+ GGVGR AQAK +    QGRWP KSA F+L LL+NAESNA+ KGLDVD L + HIQVN
Sbjct: 62  RYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVN 121

Query: 242 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           +A   RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELILS 152


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  135 bits (327), Expect = 1e-32
 Identities = 64/91 (70%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
 Frame = -3

Query: 419 RFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVN 243
           R+ GGVGR AQ K   +  QGRWP KSA F+L LL+NAESNAD KGLDVD L + HIQVN
Sbjct: 74  RYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVN 133

Query: 242 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           +A   RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct: 134 QAQKQRRRTYRAHGRINPYMSSPCHVELILS 164


>01_05_0708 +
           24477228-24477375,24477823-24477905,24478233-24478391,
           24478882-24478992,24479098-24479164,24479269-24479537
          Length = 278

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -3

Query: 350 KKSAEFLLQLLRNAESNADYK-GLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 174
           K++A+ + Q++ +A +NA +  GLD D+L+++   V +   L+R +Y A GR    +   
Sbjct: 159 KRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGVMVRPR 218

Query: 173 CHIEV 159
           C + V
Sbjct: 219 CRLTV 223


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 350  KKSAEFLLQLLRNAE--SNADYKGLDVDRLVIDHIQVNRAPCLR 225
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>04_04_1362 + 32897581-32897925,32897979-32897984
          Length = 116

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 316 LKSWSRNSADFLGQRPCVVPNCLACAQRPTPPLKR 420
           L++W R SA  +  RP +     ACA+    P +R
Sbjct: 14  LRAWIRRSATAVALRPLLTGVAAACAEAIASPARR 48


>03_01_0427 + 3296717-3296861,3296966-3297210
          Length = 129

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 361 PCVVPNCLACAQRPTPPL 414
           PCV+PNC A A R  P L
Sbjct: 92  PCVIPNCKASAARLCPLL 109


>10_08_0403 -
           17635530-17635578,17635737-17635820,17636110-17636219,
           17637507-17637638,17638497-17638576,17638877-17639008,
           17639534-17639648,17640244-17640286,17640359-17640493,
           17641347-17641414,17641473-17641478
          Length = 317

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 107 HHQRGQLGRQHPHVHLGTPLCDRGMTCKG*YDRAHGTYVYV 229
           H  R + G++        PL D G  C+G   +AH T + V
Sbjct: 16  HESRRRWGKRVCQQKTEEPLVDLGCRCRGDLSKAHRTCISV 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,025,655
Number of Sequences: 37544
Number of extensions: 146684
Number of successful extensions: 406
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)