Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D14
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   157   4e-39
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   106   6e-24
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  157 bits (380), Expect = 4e-39
 Identities = 71/90 (78%), Positives = 79/90 (87%)
 Frame = -3

Query: 419 RFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNR 240
           RF+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+YKGLDVD LVI+HI V R
Sbjct: 64  RFHGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQR 123

Query: 239 APCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           A  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 124 AAKLRRRTYRAHGRINPYMSSPCHIEVILA 153


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  106 bits (255), Expect = 6e-24
 Identities = 49/60 (81%), Positives = 53/60 (88%)
 Frame = -3

Query: 329 LQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           L LL+NAESNA+YKGLDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 326 GAGILQISWANDPVWYQTV*LVH 394
           GAG+ +I W N+  W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


>Z92838-6|CAB07411.1|   84|Caenorhabditis elegans Hypothetical
           protein T03D8.7 protein.
          Length = 84

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 143 HVHLGTPLCDRGMTCKG*YDRAHGTYVYVDRVRD*PEYDQSRACQRLNLCSQ 298
           H   GT +C+    C G YD     Y+Y     + P Y  S +C +   C Q
Sbjct: 33  HCPNGT-MCNNNWCCPGCYDTCSNCYMYTAYCNN-PYYSCSMSCCKAT-CGQ 81


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -3

Query: 356 WPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 195
           W K+    +  LL  AE++      D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 194 NPYMSSPCHIE 162
           NP+  SPC ++
Sbjct: 548 NPH--SPCMVD 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,409,141
Number of Sequences: 27780
Number of extensions: 122664
Number of successful extensions: 318
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)