Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D14
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 269  ACQRLNLCSQHLIQHSSKVGAGILQISWANDPVWYQ 376
            A + +N+  QH  Q +++V   ILQ    +  +W Q
Sbjct: 920  ASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQ 955


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 269  ACQRLNLCSQHLIQHSSKVGAGILQISWANDPVWYQ 376
            A + +N+  QH  Q +++V   ILQ    +  +W Q
Sbjct: 916  ASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQ 951


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 131 RQHPHVHLGTPLCDRGM 181
           R HPH  +G   C +G+
Sbjct: 110 RPHPHNLVGKEACKQGV 126


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 131 RQHPHVHLGTPLCDRGM 181
           R HPH  +G   C +G+
Sbjct: 110 RPHPHNLVGKEACKQGV 126


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 218 TYRAHGRINPYMSSPC 171
           T +AH R+ P  SS C
Sbjct: 64  TAQAHHRLYPAFSSSC 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,221
Number of Sequences: 438
Number of extensions: 1612
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)