Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D14
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   134   3e-32
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   134   3e-32
At4g28360.1 68417.m04059 ribosomal protein L22 family  protein         31   0.32 
At1g52370.1 68414.m05910 ribosomal protein L22 family  protein s...    30   0.73 
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac...    28   3.0  
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac...    28   3.0  
At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family pr...    27   3.9  
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    27   6.8  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  134 bits (323), Expect = 3e-32
 Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
 Frame = -3

Query: 419 RFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVN 243
           RF  GVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN
Sbjct: 62  RFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVN 121

Query: 242 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           +A   RRRTYRAHGRINPYMS+PCHIE+ LS
Sbjct: 122 QAAKQRRRTYRAHGRINPYMSNPCHIELILS 152


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  134 bits (323), Expect = 3e-32
 Identities = 65/91 (71%), Positives = 73/91 (80%), Gaps = 1/91 (1%)
 Frame = -3

Query: 419 RFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVN 243
           RF  GVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN
Sbjct: 62  RFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVN 121

Query: 242 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 150
           +A   RRRTYRAHGRINPYMS+PCHIE+ LS
Sbjct: 122 QAAKQRRRTYRAHGRINPYMSNPCHIELILS 152


>At4g28360.1 68417.m04059 ribosomal protein L22 family  protein
          Length = 271

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 350 KKSAEFLLQLLRNAESNADYK-GLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 174
           K++A+ + +++  A +NA +  GLD DRL++    V +    ++  Y A GR        
Sbjct: 145 KRAAQTVYRVIHAARANATHNHGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPR 204

Query: 173 CHIEV 159
           C + V
Sbjct: 205 CRLTV 209


>At1g52370.1 68414.m05910 ribosomal protein L22 family  protein
           similar to GB:Z67753 from [Odontella sinensis]
          Length = 269

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 350 KKSAEFLLQLLRNAESNADYK-GLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 174
           K++++ + +++  A +NA +  GLD DRL++    V +    ++  Y A GR        
Sbjct: 144 KRASQTVYRVIHAARANATHNHGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPR 203

Query: 173 CHIEV 159
           C + V
Sbjct: 204 CRLTV 208


>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 575

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 368 TQGRWPKKSAEFLLQLLRNAESNADYKG 285
           +  RWPK   E L+++ +N E+N    G
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEANYQENG 421


>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 498

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 368 TQGRWPKKSAEFLLQLLRNAESNADYKG 285
           +  RWPK   E L+++ +N E+N    G
Sbjct: 317 SSSRWPKTEVEALIRIRKNLEANYQENG 344


>At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family
           protein / F-box family protein contains Pfam profiles
           PF00514: Armadillo/beta-catenin-like repeat, PF00646:
           F-box domain; similar to F-box protein FBL2 (GI:6010699)
           [Rattus norvegicus]
          Length = 928

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 320 LRNAESNADYKGLDVDRLVIDHIQVNR 240
           L N E      GLDV R  IDHI V+R
Sbjct: 246 LENWEKLPKLIGLDVSRTTIDHIAVSR 272


>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related contains
            weak similarity to Swiss-Prot:Q9NZW4 dentin
            sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 311  HSSKVGAGILQISWANDPVWYQTV*LVHNGQLHR*ND 421
            HS+ VGA   QIS    P WY       NG +   ND
Sbjct: 1172 HSASVGADHQQISPQMAPSWYSQYGTFKNGLVQPVND 1208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,958,751
Number of Sequences: 28952
Number of extensions: 112233
Number of successful extensions: 262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)