Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D13
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   1.5  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    26   3.5  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 274 LVPKKDTCDLA*NLTRGNENKCTNL*KKNITYLMND 167
           L+P K +C L   + +    K  N  ++N+ Y MND
Sbjct: 166 LLPPKPSCPLFKKMQKNLSRKLDNELERNLVYSMND 201


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 408 ARNGLYSELITGIYL*DSAFTPKFYPHNKVIN 313
           A+  L++  ITG +   + F  KFYP NK++N
Sbjct: 17  AQKSLFNRQITGNHWIFARF--KFYPLNKIVN 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,845
Number of Sequences: 5004
Number of extensions: 34374
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)