Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D13
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 118 SYSDTMTMSLATALPANKLRWYKDMVSSSSATCGPR 11
           S + T T +  T  P  + +W+K   S+S    GPR
Sbjct: 223 STTTTPTPTTTTQSPNTRAQWWKTTTSASRWVAGPR 258


>AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical
           protein F22E5.11 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = -3

Query: 417 SREARNGLYSELITGIYL*DSAFTPKFYPHNKVIN------LYLKIIFCIFYVTLYLKKI 256
           +++ ++ + S L+    L DS   P+F  H K I       L LK+IF I ++ L +  +
Sbjct: 16  AQKIKDNIRSSLVNLKLLFDSQEPPEF-DHQKFIMSIVIMILLLKLIFLILFIVLVVFTL 74

Query: 255 HVI 247
           H++
Sbjct: 75  HIL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,819,443
Number of Sequences: 27780
Number of extensions: 186126
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)