Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D13
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12560.1 68417.m01982 F-box family protein contains F-box dom...    29   2.2  
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila...    27   6.7  

>At4g12560.1 68417.m01982 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 413

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 100 SSYPNTIIN*LLVKLVISTLLRCHSLNT*CFFFTN 204
           ++ P  I+N + ++L   TL+RC +L+  C+   N
Sbjct: 2   ATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLIN 36


>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 817

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 73  ANKLRWYKDMVSSSSATCGPRAE 5
           + KLR++KD +  +   C PR E
Sbjct: 71  SRKLRFFKDQIDKAGLRCSPRLE 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,986,424
Number of Sequences: 28952
Number of extensions: 161037
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)