Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D12
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    77   2e-15
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    76   3e-15
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    72   6e-14
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.51 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   2.7  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    25   4.7  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   8.3  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 41/90 (45%), Positives = 51/90 (56%)
 Frame = +1

Query: 223 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 402
           SK+    PES+                   ++++A  KKR+ I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 403 EIRLARQARNRGNYYVPGEAKLAFVIRIRG 492
           +I L R+AR  GNYYVP E KL FVIRIRG
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRG 99


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 39/83 (46%), Positives = 49/83 (59%)
 Frame = +1

Query: 244 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 423
           PES+                   +++SA  KKR+ I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 424 ARNRGNYYVPGEAKLAFVIRIRG 492
           AR  GNY+VP E KL FV+RIRG
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRG 98


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 71.7 bits (168), Expect = 6e-14
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +1

Query: 310 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 489
           + ++ A  K RKE FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 490 G 492
           G
Sbjct: 97  G 97


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 328 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 441
           S+K+ +EI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 358 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 459
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 319 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 432
           R  S K ++E  +R +QYV E    E+D+I + +  ++
Sbjct: 67  RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 313 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 441
           KR  A  ++ K+  +R ++ + E   KE++ IRL  + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,115
Number of Sequences: 5004
Number of extensions: 34419
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)