Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D12
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    71   5e-13
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    70   9e-13
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356...    29   1.6  
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37...    29   2.7  
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    28   4.7  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 35/88 (39%), Positives = 51/88 (57%)
 Frame = +1

Query: 229 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 408
           K   VPESV               +  L  +  +++ RK IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 409 RLARQARNRGNYYVPGEAKLAFVIRIRG 492
           +L R+AR +G +YV  EAKL FV+RIRG
Sbjct: 67  QLKREARMKGGFYVSPEAKLLFVVRIRG 94


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 34/84 (40%), Positives = 49/84 (58%)
 Frame = +1

Query: 241 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 420
           VPESV               +  +  +  SI+ RK IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 421 QARNRGNYYVPGEAKLAFVIRIRG 492
           +AR +G +YV  E KL FV+RIRG
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRG 93


>02_05_0756 -
           31534011-31534141,31534235-31535338,31535448-31535692,
           31535789-31535940,31536051-31536158
          Length = 579

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 489 TNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 340
           TN  +KC     G+   A++ ++S QS  I +LDA ++    G  ++ FP
Sbjct: 384 TNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433


>11_01_0049 -
           375049-375342,375596-375660,375907-375956,376492-376541
          Length = 152

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 335 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 439
           R+G KS+  P N  K+   R +M S+ +  L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142


>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 105  IIRLREPIGSASSSYYSHDGCDYRKEGCGREKTCEG*RGQ*EVASCSGISLEAP*KEGGT 284
            ++++R    S+SS     D  D+R    GR +         E   CS +S++AP  E   
Sbjct: 1277 VVKIRVKRASSSSKA---DDADHRDHSHGRNEN--------EAGPCSSMSVDAPMTEAPE 1325

Query: 285  PSSPSSDHTQEAFRFH*EEERN 350
            P + S+ + +E    H  E+ +
Sbjct: 1326 PVNVSNHNIEEQNSCHDREQNS 1347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,267,809
Number of Sequences: 37544
Number of extensions: 231600
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)