Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D12
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       93   1e-19
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   4.9  
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            27   6.4  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       27   8.5  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 45/92 (48%), Positives = 59/92 (64%)
 Frame = +1

Query: 217 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 396
           +D  K+P VPE++               +  L ++     KRKEIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 397 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 492
            DE+R+ + A+  GN+YVP EA+LAFVIRIRG
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRG 94


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 319 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 444
           R   + +R+EI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 322 SASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQAR 429
           S   +KRK +FK  ++  K+ ++++ D  +++ Q +
Sbjct: 802 STETRKRKHVFKSGDRTAKKRKLEDNDHEKISTQVK 837


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 391 KERDEIRLARQARNRGNYYVP 453
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 93  CDFYIIRLREPIGSASSSYYSHDGCDYRK 179
           C+FY++    P  +A S Y   D C Y K
Sbjct: 95  CNFYMMFYYNPNEAARSEYSPEDSCGYAK 123


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 319 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 444
           R  +I +R+E+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 438 ATVTSLSCQSDF-ITLLDAVFFDILFGSLKD 349
           ATV+  S +  F  T L  V+FD  F SLKD
Sbjct: 6   ATVSGRSMRLSFGATALSGVWFDFYFSSLKD 36


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 334  KKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 468
            KK KE+  +  Q   ++ + + D  RLA + R R    +P + ++
Sbjct: 967  KKAKELVSKQRQISTKFELMDNDLYRLAEKLRERKRLGLPEQEEV 1011


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 310  LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 468
            ++R     ++R+E  +R  +  +E R++  DE+R  R+  +RG   +  E +L
Sbjct: 1148 MRREEKDARRREEEERRLRE--EEDRLRREDELRRKREDDDRGRRKLAEERRL 1198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,354,689
Number of Sequences: 59808
Number of extensions: 273959
Number of successful extensions: 773
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)