Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D12
(494 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 73 8e-14
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 73 8e-14
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 71 3e-13
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 71 3e-13
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 71 3e-13
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 70 1e-12
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 44 6e-05
At1g31820.1 68414.m03908 amino acid permease family protein weak... 31 0.56
At3g52860.1 68416.m05825 expressed protein 29 1.7
At5g45310.1 68418.m05562 expressed protein 28 3.0
At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing... 28 4.0
At5g38010.1 68418.m04578 UDP-glucoronosyl/UDP-glucosyl transfera... 27 5.3
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 27 5.3
At3g09120.1 68416.m01073 hypothetical protein contains Pfam prof... 27 6.9
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 27 6.9
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 73.3 bits (172), Expect = 8e-14
Identities = 38/84 (45%), Positives = 49/84 (58%)
Frame = +1
Query: 241 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 420
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 421 QARNRGNYYVPGEAKLAFVIRIRG 492
+A+ +G +YV EAKL F+IRIRG
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRG 96
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 73.3 bits (172), Expect = 8e-14
Identities = 38/84 (45%), Positives = 49/84 (58%)
Frame = +1
Query: 241 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 420
VPESV + + S++ RK IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 421 QARNRGNYYVPGEAKLAFVIRIRG 492
+A+ +G +YV EAKL F+IRIRG
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRG 91
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 71.3 bits (167), Expect = 3e-13
Identities = 38/91 (41%), Positives = 53/91 (58%)
Frame = +1
Query: 220 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 399
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 400 DEIRLARQARNRGNYYVPGEAKLAFVIRIRG 492
+ I+L R+A+ +G +YV EAKL F+IRIRG
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRG 93
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 71.3 bits (167), Expect = 3e-13
Identities = 38/91 (41%), Positives = 53/91 (58%)
Frame = +1
Query: 220 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 399
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 400 DEIRLARQARNRGNYYVPGEAKLAFVIRIRG 492
+ I+L R+A+ +G +YV EAKL F+IRIRG
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRG 93
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 71.3 bits (167), Expect = 3e-13
Identities = 38/91 (41%), Positives = 53/91 (58%)
Frame = +1
Query: 220 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKER 399
+++ VPESV Q + + +KRK IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 400 DEIRLARQARNRGNYYVPGEAKLAFVIRIRG 492
+ I+L R+A+ +G +YV EAKL F+IRIRG
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRG 93
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 69.7 bits (163), Expect = 1e-12
Identities = 38/84 (45%), Positives = 48/84 (57%)
Frame = +1
Query: 241 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 420
VPESV Q + + + RK IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 421 QARNRGNYYVPGEAKLAFVIRIRG 492
+A+ +G +YV EAKL F+IRIRG
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRG 91
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 44.0 bits (99), Expect = 6e-05
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = +1
Query: 214 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 393
+E++K L +PE V + S KK+ KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 394 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRG 492
E D IR+ ++ + + P ++ L F+IRI+G
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQG 95
>At1g31820.1 68414.m03908 amino acid permease family protein weak
similarity to asc-type amino acid transporter 2 [Mus
musculus] GI:18148438; contains Pfam profile PF00324:
Amino acid permease
Length = 482
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -3
Query: 399 TLLDAVFFDILFGSLKDFFPLLNGSGT-PLECDLKT 295
TL A+ + ++F +L +F PLL+G+G PL+ +L T
Sbjct: 245 TLPKALCYGVIFVALSNFLPLLSGTGAIPLDRELWT 280
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 310 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 408
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 340 RKEIFKRAEQYVKEYRIKERD 402
RKEI K + +KEYRI E+D
Sbjct: 107 RKEIEKNLREAIKEYRIMEQD 127
>At3g54690.1 68416.m06051 sugar isomerase (SIS) domain-containing
protein / CBS domain-containing protein similar to
SP|Q47334 Polysialic acid capsule expression protein
kpsF {Escherichia coli}; contains Pfam profiles PF01380:
sugar isomerase (SIS) domain, PF00571: CBS domain
Length = 350
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 462 SFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLE 310
+F + + T+ SLS +S F++ LDA+ DI S +D + SG E
Sbjct: 80 AFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEE 130
>At5g38010.1 68418.m04578 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 453
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 132 SASSSYYSHDGCDYRKEGCGREK 200
SA Y+ DG KEGCGRE+
Sbjct: 149 SAMCKLYAKDGLAPLKEGCGREE 171
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
mutase family protein similar to X4 protein GI:21386798,
Y4 protein GI:21386800 from [Silene dioica]; contains
Pfam profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 267 TVLQD*FRNSWQLLTVLFTLHRFFLGRSLLFCS 169
TVLQ +RN WQ+ + T H L + LFCS
Sbjct: 375 TVLQHSWRNGWQIKRMNDTAH-LRLFKKALFCS 406
>At3g09120.1 68416.m01073 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 333
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 432 VTSLSCQSDFITLLDAVFFDILFGSLKDFFPLLNGSGTPLECDLK 298
V +SC+S FI D ++ S+ + +LNG G P DLK
Sbjct: 137 VVFVSCRSSFILTDD---LKVMLNSIDEIVKVLNGLGYPNINDLK 178
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.1 bits (57), Expect = 6.9
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 313 KRRSASIKKRKEIFKRAEQYVK----EYRIKERDEI-RLARQARNR 435
KRR +KR+E KR E+ K E + KER+E+ R R+ + R
Sbjct: 556 KRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQER 601
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,869,892
Number of Sequences: 28952
Number of extensions: 184908
Number of successful extensions: 474
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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