Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D11
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   5.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   9.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 276 EWPFDIKRRTRLLVRTPCFI 217
           EWP  +++R  L +   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 276 EWPFDIKRRTRLLVRTPCFI 217
           EWP  +++R  L +   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 267 FDIKRRTRLLVR--TPCFIGKPCLSLPP 190
           + +KR  R ++   +  ++G  C+SLPP
Sbjct: 149 YGVKRTPRRMIVYVSLVWLGAACISLPP 176


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 197 YRRQHGEHNLSIRRLEDLHQLQRPYAFH 114
           Y RQH ++    + +E + + +R    H
Sbjct: 55  YHRQHSKNEQQRKEMEQMREREREQREH 82


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 122 RMGAEVDADLLGDEWKGYV 178
           R+G  + +D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,029
Number of Sequences: 438
Number of extensions: 2533
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)