Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D10
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical...    29   2.2  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81481-8|CAB63438.2|  343|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = +1

Query: 328 HTPVPTPARSLYGFFMYFSSNVVLGVYCLWAFTPDYILHYFNIYYYP 468
           H P P PAR +YGF +Y  S  +  +Y +WA TP  IL+   I Y P
Sbjct: 24  HLPGPHPARGIYGFALYIVSWTLFVIYLIWAITPVPILYRLGITYIP 70


>AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical
           protein Y116F11B.9a protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 330 VFRHFNSYLF--SKRSIVFKISRMLLNIEFKD 241
           +  H  SY    SKRS  F IS+ML N++F+D
Sbjct: 302 IIYHQKSYNLKVSKRSSEFSISKMLKNLKFRD 333


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 373 MYFSSNVVLGVYC---LWAFTPDYILHYFNIYYY 465
           M+F+   ++ ++C   L    P + LH F++YYY
Sbjct: 55  MHFNLKFLMKIHCAALLIHCVPRFFLHLFDLYYY 88


>Z81481-8|CAB63438.2|  343|Caenorhabditis elegans Hypothetical
           protein C38D9.9 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 200 IIEFKGYDLKRLRVSLNSIFKS 265
           +I+ + Y LKR+++S+N +FKS
Sbjct: 59  LIDNRDYGLKRIKLSINIMFKS 80


>U50068-2|AAD47116.3|  426|Caenorhabditis elegans Hypothetical
           protein C01G5.9 protein.
          Length = 426

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 311 ELKCLNTHQCPHQRGPCMDFLCTSAVM*SWVCIV 412
           E KCLN H+C H+     D +  +    SWV  V
Sbjct: 240 ETKCLNRHRCRHEM-QLQDCVFRTQKYSSWVATV 272


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 319 MPEHTPVPTPARSLYG 366
           MP HT + TP R L+G
Sbjct: 77  MPSHTEIKTPVRGLFG 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,554,323
Number of Sequences: 27780
Number of extensions: 211016
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)