Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D10
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53045.1 68418.m06589 expressed protein                             40   8e-04
At1g61280.1 68414.m06907 expressed protein similar to SP|P57054 ...    36   0.014
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ...    29   2.1  
At1g09680.1 68414.m01087 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At5g39410.1 68418.m04774 expressed protein                             28   2.8  
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468...    28   3.7  
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina...    27   8.5  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   8.5  

>At5g53045.1 68418.m06589 expressed protein 
          Length = 96

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = +2

Query: 98  SIDSALMVRDILCVDKELQRGFVERQISVVGDLLIIEFKGYDLKRLRVSLNSIFKSILLI 277
           S + AL+    L VDKELQ   V R +SV  + L + F+  + + LR S ++    + L 
Sbjct: 27  SEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKLSVHFEAIEARLLRASFSAFVDVLTLA 86

Query: 278 LKTIDLFENK 307
            +TI  F  K
Sbjct: 87  TRTIQEFGQK 96


>At1g61280.1 68414.m06907 expressed protein similar to SP|P57054
           Down syndrome critical region protein 5 (Down syndrome
           critical region protein C) {Homo sapiens}; expression
           supported by MPSS
          Length = 137

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 358 LYGFFMYFSSNVVLGVYCLWAFTPDYILHYFNIYYYP 468
           +YGF    S  V   ++ +W + PD  L    IYYYP
Sbjct: 16  VYGFVGSISIVVATVIFLIWGYVPDKFLESIGIYYYP 52


>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 602

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 345 CGHWCVFRHFNSYLFSKRSI 286
           C   C+++ F+SY+F+KRSI
Sbjct: 581 CSMECLYQMFSSYIFNKRSI 600


>At1g09680.1 68414.m01087 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 607

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 313 VEMPEHTPVPTPARSLYGFFMYFSS 387
           V++  H P+  P RS++ FF + SS
Sbjct: 86  VDLINHNPLSLPQRSIFAFFKFISS 110


>At5g39410.1 68418.m04774 expressed protein
          Length = 454

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 322 PEHTPVPTPARSLYGFFMYFSSNVVLGVYCLWAFTPDYILHYFNIY 459
           P H  V   ++SL+G F Y +  V LG+   ++F    +L + +++
Sbjct: 293 PAHFGVKITSKSLFGIFRYVTLGVSLGLLSKFSFGRWLLLKFPSVF 338


>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF02810: SEC-C motif
          Length = 862

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -2

Query: 249 FKDTLSLLRS*PLNSIMRRSPTTEI*RSTKPRCNSLS 139
           FK+TL    S P +S +R S T E+  S KP  +SLS
Sbjct: 7   FKETLKPCGSFPSSSSLRVSSTQELEPSRKPPKSSLS 43


>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain
          Length = 956

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 125 DILCVDKELQRGFVERQISVVGDLLIIEFKGYDLKRLRVSLNSI 256
           D+L     L  GF ER+ISVV  L++ E +   L+R +V   S+
Sbjct: 343 DVLVARVRLH-GFSEREISVVRALMMSEIESAYLERDQVQSTSL 385


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 176 ISVVGDLLIIEFKGYDLKRLRVSLNSIFKSILLILKTIDLFENK*EL 316
           + VV   L+I++KG+    +    +SIF SIL+I   I L  N  E+
Sbjct: 671 VGVVISTLLIKYKGW---LVADPASSIFISILIIASVIPLLRNSAEI 714


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,688,248
Number of Sequences: 28952
Number of extensions: 186926
Number of successful extensions: 424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)