Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D09
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   0.94 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   6.7  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   6.7  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    25   8.8  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 457 QRAPSRKTYARDIAPPAASLGTLHDGS 377
           Q +P R TY+R    P+AS+  L DGS
Sbjct: 430 QVSPKRPTYSRSSPLPSASVPALGDGS 456


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 204 QILNKHLTVQNHRAIDGPNTIR*RSSLIREVKILSIMMMLAKKPKKKSLYTSCFGD 37
           QI+++H++       + P +++  +SL+      S  ++ +   K KSL  +C GD
Sbjct: 177 QIVHEHVS----HVFNNPESLQVAASLLLPALSGSCALLTSYSAKSKSLQVACTGD 228


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 298 IRACYKLKDTVLHPSIKI 351
           + +CYKLK  VLH S+ +
Sbjct: 448 LTSCYKLKKLVLHDSLAL 465


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 378 PVGLEIFNLNFNTW 337
           P G+ I+ LNF+TW
Sbjct: 66  PAGMAIYFLNFSTW 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,569
Number of Sequences: 5004
Number of extensions: 29193
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)