Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D09
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510     30   0.95 
08_02_0896 + 22355097-22355627                                         28   3.8  
12_01_1067 - 11009508-11010071,11010122-11010679                       28   5.1  

>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
          Length = 964

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 467 RMVTESPQ*KDIRARHSSACSVSRNVTRWFQW 372
           R+VT  P+  D+ AR    CS+  ++TR F W
Sbjct: 783 RVVTMEPRDLDVLARMPELCSLRLDITRRFPW 814


>08_02_0896 + 22355097-22355627
          Length = 176

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 424 LARMSFYWGLSVTIL 468
           +  MSFYWG SVTIL
Sbjct: 1   MMHMSFYWGTSVTIL 15


>12_01_1067 - 11009508-11010071,11010122-11010679
          Length = 373

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 445 SRKTYARDIAPPAASLGTLHDGSSGTRDF*FKF*YLDVIQCLSICNKP 302
           ++KT  + +AP A ++      S G  DF  K   + + Q    C KP
Sbjct: 2   AKKTLCKFVAPSAGNMPDGTHASMGDGDFDMKISLVKMAQACPFCGKP 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,278,635
Number of Sequences: 37544
Number of extensions: 176548
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)