Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D09
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084196-7|AAK29949.2|  284|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL022289-5|CAA18373.1|  107|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AC084196-7|AAK29949.2|  284|Caenorhabditis elegans Hypothetical
           protein Y55D5A.6 protein.
          Length = 284

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 397 RETLQAELCLARMSFYWGLSVTILLYLLRL 486
           R T Q E C+  + +Y GLS  ++ YL+ +
Sbjct: 243 RATSQTEFCMPDVIYYLGLSTVVICYLITI 272


>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 351 NFNTWM*YSVFQFVTSPYYTNA 286
           N NTW+ Y+   F T+ YY+N+
Sbjct: 30  NGNTWITYAAITFYTNNYYSNS 51


>AL022289-5|CAA18373.1|  107|Caenorhabditis elegans Hypothetical
           protein ZK1225.6 protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 220 HYVVITNS*QASDGTKSSSDRRAEYNPIAQFIDTRGK 110
           HY+V  +  + +   KSS++      P+  F+D +GK
Sbjct: 20  HYIVSESESRLAFKVKSSNNESYRVRPVYGFVDAKGK 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,119
Number of Sequences: 27780
Number of extensions: 162324
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)