Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D08
(479 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 219 3e-56
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 184 7e-46
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 183 2e-45
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 158 5e-38
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 149 4e-35
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 137 1e-31
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 132 4e-30
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 128 8e-29
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 119 4e-26
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 108 6e-23
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 107 1e-22
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 99 6e-20
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 95 7e-19
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 93 3e-18
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 83 4e-15
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 79 4e-14
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 71 2e-11
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 52 5e-06
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 52 7e-06
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 52 9e-06
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 51 2e-05
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 51 2e-05
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 50 4e-05
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 48 1e-04
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 45 0.001
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 44 0.001
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 44 0.002
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 44 0.002
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 42 0.005
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 38 0.15
UniRef50_Q1DMF8 Cluster: Predicted protein; n=1; Coccidioides im... 36 0.47
UniRef50_Q41DV7 Cluster: Rod shape-determining protein MreC, sub... 33 4.4
UniRef50_A3PDQ5 Cluster: Putative uncharacterized protein; n=1; ... 32 7.7
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 219 bits (535), Expect = 3e-56
Identities = 106/140 (75%), Positives = 121/140 (86%)
Frame = +3
Query: 60 IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
+VDPFTR K +K +MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + D
Sbjct: 21 VVDPFTR-KDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPD 79
Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
AERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQTLIE ++DV+TTDG++LR
Sbjct: 80 AERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLR 139
Query: 420 VFCIGFTNKDTLSQRKTCYA 479
VFCIGFT KD++SQRKTCYA
Sbjct: 140 VFCIGFTIKDSMSQRKTCYA 159
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 184 bits (449), Expect = 7e-46
Identities = 92/140 (65%), Positives = 110/140 (78%)
Frame = +3
Query: 60 IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
+VDPF++ K +K +MF R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D
Sbjct: 21 VVDPFSK-KDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND-- 77
Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
E +FRKF+LI EDVQG+N L NFHGMDLT DK+ MVKKWQT+IEA++DV+TTDGY+LR
Sbjct: 78 -EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLR 136
Query: 420 VFCIGFTNKDTLSQRKTCYA 479
+FC+GFT K RKT YA
Sbjct: 137 LFCVGFTKKRNNQIRKTSYA 156
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 183 bits (445), Expect = 2e-45
Identities = 92/138 (66%), Positives = 107/138 (77%)
Frame = +3
Query: 66 DPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 245
DPF + K +K S+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D
Sbjct: 417 DPFAK-KDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED-- 473
Query: 246 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVF 425
+++RK RL AEDVQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DV+TTD Y LR+F
Sbjct: 474 QAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLF 533
Query: 426 CIGFTNKDTLSQRKTCYA 479
CI FT K +KTCYA
Sbjct: 534 CIAFTKKRVNQNKKTCYA 551
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 158 bits (384), Expect = 5e-38
Identities = 83/143 (58%), Positives = 105/143 (73%), Gaps = 4/143 (2%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQA 230
VDPFTR K +++ + F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTR-KEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK- 73
Query: 231 DSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGY 410
D + FRK +L AE+V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DV+TTDGY
Sbjct: 74 -DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGY 132
Query: 411 VLRVFCIGFTNKDTLSQRKTCYA 479
LRVF I FT K ++KT YA
Sbjct: 133 FLRVFAICFTKKGESQKKKTSYA 155
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 149 bits (360), Expect = 4e-35
Identities = 75/138 (54%), Positives = 97/138 (70%)
Frame = +3
Query: 66 DPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 245
DPF R K +K + F R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D
Sbjct: 22 DPFAR-KDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED-- 78
Query: 246 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVF 425
+FRK +L ++VQG+N L NFHG+D T+DKLR +V+KWQ+LIEAN+ V+TTD Y+LR+F
Sbjct: 79 HAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLF 138
Query: 426 CIGFTNKDTLSQRKTCYA 479
I T + +KT YA
Sbjct: 139 AIAVTKRRPNQIKKTTYA 156
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 137 bits (331), Expect = 1e-31
Identities = 71/140 (50%), Positives = 97/140 (69%)
Frame = +3
Query: 60 IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
I +PF++ K +K F +R VG +VN+T GT+IASE LKGRV EV+LADL +
Sbjct: 22 IAEPFSK-KEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEK 80
Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
KF+ EDV G++ L FHG+ LTTDKLR +VKKW TLIE ++DV+TTDG+++R
Sbjct: 81 FGAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIR 138
Query: 420 VFCIGFTNKDTLSQRKTCYA 479
+FCIGFT++ + +KT YA
Sbjct: 139 IFCIGFTSRKSNQIKKTSYA 158
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 132 bits (319), Expect = 4e-30
Identities = 56/121 (46%), Positives = 83/121 (68%)
Frame = +3
Query: 117 FTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRN 296
F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL + E ++RK R ++VQGRN
Sbjct: 39 FEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRN 98
Query: 297 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCY 476
+L FH M++TTDK+ +++KW T +E ++V+T DGY +R+F + FT Q + CY
Sbjct: 99 LLTQFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCY 158
Query: 477 A 479
A
Sbjct: 159 A 159
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 128 bits (308), Expect = 8e-29
Identities = 62/142 (43%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
+DP +R K + F+ + G TLV ++ G +IASE +KGRV E +LADL+ D+
Sbjct: 23 IDPLSR-KEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSN 80
Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
++++RK +L+ ++V GRN +F+G+D+T D+L M++KWQTLIEA +D +T DGY++RV
Sbjct: 81 DKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRV 140
Query: 423 FCIGFTNKDTL---SQRKTCYA 479
F + FT K + S TCYA
Sbjct: 141 FTLAFTKKTSAGKQSSTSTCYA 162
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 119 bits (286), Expect = 4e-26
Identities = 62/139 (44%), Positives = 85/139 (61%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
+DP R K L F G T +N++ GT +A+E +KGRV E SLADLQ SD
Sbjct: 19 IDPLAR-KEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD- 76
Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
+ ++RK +LI +DV+G +F+G+D T DK+ M+KK QTLIE ++ + DGY+LR+
Sbjct: 77 QMAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRI 136
Query: 423 FCIGFTNKDTLSQRKTCYA 479
F I FT QRKT YA
Sbjct: 137 FVIAFTKSIKNQQRKTTYA 155
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 108 bits (260), Expect = 6e-23
Identities = 62/115 (53%), Positives = 79/115 (68%)
Frame = +3
Query: 60 IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
+VDPF++ K + +MF R +G TLV RTQGTKIAS+G RVFEVSLADLQ D
Sbjct: 21 VVDPFSK-KDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASDG---RVFEVSLADLQND-- 74
Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTD 404
E +FRKF+LI EDVQG+N L NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 75 -EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 107 bits (257), Expect = 1e-22
Identities = 59/118 (50%), Positives = 76/118 (64%)
Frame = +3
Query: 99 LKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAE 278
+K +MF R +G T V R Q TK+ S GL G VFE SLA LQ D RKF+LI E
Sbjct: 18 VKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQNDKVV---VRKFKLITE 74
Query: 279 DVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDT 452
D++G+N L N +GMDLT DK V KWQ ++EA+ DV+T D Y+L +FC+G+T T
Sbjct: 75 DMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYTTNVT 131
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 98.7 bits (235), Expect = 6e-20
Identities = 48/76 (63%), Positives = 55/76 (72%)
Frame = +3
Query: 252 FRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCI 431
FRKF+L EDVQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DV+TTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 432 GFTNKDTLSQRKTCYA 479
FT K Q+ YA
Sbjct: 67 AFTKKQE-DQKSHAYA 81
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 95.1 bits (226), Expect = 7e-19
Identities = 49/79 (62%), Positives = 58/79 (73%)
Frame = +3
Query: 99 LKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAE 278
+K +MF R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E +FRKF+LI E
Sbjct: 33 MKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---EVAFRKFKLITE 89
Query: 279 DVQGRNVLCNFHGMDLTTD 335
DVQG+ L NF M L+ D
Sbjct: 90 DVQGKRCLINFRSMGLSCD 108
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 93.1 bits (221), Expect = 3e-18
Identities = 46/120 (38%), Positives = 69/120 (57%)
Frame = +3
Query: 117 FTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRN 296
F R +G T V +T G ++A++ + RV+EV+L DL ++ KF L + V
Sbjct: 36 FKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGK 95
Query: 297 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCY 476
L NFHGMD+T K + +K I+ +D+ TTDGY+LRVF I FT++ +RK C+
Sbjct: 96 CLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCH 155
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 82.6 bits (195), Expect = 4e-15
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +3
Query: 123 KRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD-SDAERSFRKFRLIAEDVQGRNV 299
KR +G T+ N+ ++ + + RV+E+S AD+ D S A R F +R IA G V
Sbjct: 37 KRDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHAYRLF-SWRSIAA---GSEV 92
Query: 300 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCYA 479
F GM LT DKL +++K++T+I+A++D +T DG++LR+F IGFT K S + YA
Sbjct: 93 YTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRLFTIGFTKKLANSHKNHTYA 152
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 79.4 bits (187), Expect = 4e-14
Identities = 41/95 (43%), Positives = 57/95 (60%)
Frame = +3
Query: 192 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 371
GR ++V+ ADL ++D RKF D++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 372 IEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCY 476
IEA D+ DG V RVF +G T + +KTCY
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCY 107
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 70.5 bits (165), Expect = 2e-11
Identities = 37/121 (30%), Positives = 62/121 (51%)
Frame = +3
Query: 114 MFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGR 293
+F + +G TL+ + + + ++++VSLAD+ E S F + +
Sbjct: 34 IFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKE--EFSSINFNFKSLKIFNN 90
Query: 294 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTC 473
FHG+ LT DK+ ++KKW TLIE ++ +T DGY L++F I + K + KT
Sbjct: 91 ECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTV 150
Query: 474 Y 476
Y
Sbjct: 151 Y 151
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 52.4 bits (120), Expect = 5e-06
Identities = 42/128 (32%), Positives = 64/128 (50%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
VD F R K + + F + +G TL + G I GRV E +L D+ D
Sbjct: 9 VDAF-RAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTK 60
Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
+ FR+ E++ G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +RV
Sbjct: 61 QNIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRV 118
Query: 423 FCIGFTNK 446
I T K
Sbjct: 119 KPIVLTVK 126
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 52.0 bits (119), Expect = 7e-06
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +3
Query: 162 GTKIASEG--LKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTD 335
GT +A + L GR E ++ +L +D ++ K L +V G + G +LTTD
Sbjct: 33 GTTMAGDPSLLVGRNVETTVGELT--NDMTKNNTKVILRVNNVVGDIATTDLMGHELTTD 90
Query: 336 KLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQR 464
+R +VK+ + I+AN+DV T DG+V+RV FT K S +
Sbjct: 91 YVRSIVKRQTSRIDANVDVRTKDGFVIRVKPTCFTIKRARSSQ 133
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 51.6 bits (118), Expect = 9e-06
Identities = 32/93 (34%), Positives = 50/93 (53%)
Frame = +3
Query: 192 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 371
GRV E +L DL + F++ VQG N F G D+TTD +R M+++ ++
Sbjct: 49 GRVAESTLYDLSGNFKKMHVKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSR 106
Query: 372 IEANIDVETTDGYVLRVFCIGFTNKDTLSQRKT 470
I+ +VET+DGY +RV + ++ S KT
Sbjct: 107 IDMIFNVETSDGYRMRVKVLTVPDRRIKSSIKT 139
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 50.8 bits (116), Expect = 2e-05
Identities = 33/119 (27%), Positives = 58/119 (48%)
Frame = +3
Query: 114 MFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGR 293
++T + G ++ +T A+ L GR+ E+SL DL + + F++ + V G
Sbjct: 27 IYTPQSFGGDVIGQTPANDPAN--LIGRISEISLRDLTNEHSKHMTRMYFKV--DGVSGN 82
Query: 294 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKT 470
N F G D T + L+ V++ ++ I A ++V T DG+ +RV + T KT
Sbjct: 83 NATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKALVLTAVRARDHHKT 141
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 50.8 bits (116), Expect = 2e-05
Identities = 29/92 (31%), Positives = 46/92 (50%)
Frame = +3
Query: 192 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 371
GR E +LA+L D + +++K V G N F +LT + L + ++ +
Sbjct: 46 GRTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSK 105
Query: 372 IEANIDVETTDGYVLRVFCIGFTNKDTLSQRK 467
IE +DV T DGY LRV + FT + + +K
Sbjct: 106 IEDIVDVTTADGYKLRVKSVVFTVRRCKTSQK 137
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 49.6 bits (113), Expect = 4e-05
Identities = 31/89 (34%), Positives = 45/89 (50%)
Frame = +3
Query: 180 EGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKK 359
E + GRV E +L D+ D FR+ DV+G F G L D +R +V++
Sbjct: 34 EKVIGRVLETTLGDVLDDITKHHIKVFFRIY--DVEGTTAYSKFEGHRLMRDYVRSLVRR 91
Query: 360 WQTLIEANIDVETTDGYVLRVFCIGFTNK 446
+ I+ IDV T DGY +RV + FT +
Sbjct: 92 GTSRIDGVIDVVTKDGYKVRVAGLAFTTR 120
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 47.6 bits (108), Expect = 1e-04
Identities = 29/85 (34%), Positives = 43/85 (50%)
Frame = +3
Query: 192 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 371
GR +L +L DS A + F++ DV F +LT D LR +V++ +
Sbjct: 42 GRTITTTLGELTGDSGANNTKLTFKIT--DVGSDTAYTEFIKYELTRDYLRSLVRRGASK 99
Query: 372 IEANIDVETTDGYVLRVFCIGFTNK 446
+EA+I V TTD Y +RV + T K
Sbjct: 100 VEASITVLTTDDYRIRVQPVALTTK 124
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 44.8 bits (101), Expect = 0.001
Identities = 26/91 (28%), Positives = 50/91 (54%)
Frame = +3
Query: 174 ASEGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV 353
+ E + GR++E++ + D +FR ++E V G++ L F G T+ +R +
Sbjct: 50 SDEHIIGRIYEMTQQEFNGDFTKMHVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQI 107
Query: 354 KKWQTLIEANIDVETTDGYVLRVFCIGFTNK 446
++++ I+ IDV T DGY++R+ + T K
Sbjct: 108 RRYRGKIDDVIDVVTEDGYLVRIKPLIITQK 138
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 44.4 bits (100), Expect = 0.001
Identities = 27/95 (28%), Positives = 46/95 (48%)
Frame = +3
Query: 186 LKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQ 365
L GRV E +L D+ D F+++ V+G F G +L D +R + ++
Sbjct: 40 LIGRVMETTLFDITGDYSYVHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKS 97
Query: 366 TLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKT 470
+ + +V T DGY LRV + FT + + +K+
Sbjct: 98 SKVTGIFNVWTKDGYGLRVTAMAFTRQRCKTSQKS 132
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 44.0 bits (99), Expect = 0.002
Identities = 29/115 (25%), Positives = 53/115 (46%)
Frame = +3
Query: 96 MLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKFRLIA 275
M K S+++ + G + T ++ GR E +L DL D F+++
Sbjct: 20 MKKWFSIYSPKVFGEVSLGSTPAFDVSQT--MGRKVETTLYDLTGDFSTVYVHLYFKVVR 77
Query: 276 EDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFT 440
+ G + F G +L+ D +R +V++ + I +D+ T DG+ LRV + T
Sbjct: 78 NE--GERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKTLALT 130
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 43.6 bits (98), Expect = 0.002
Identities = 24/93 (25%), Positives = 49/93 (52%)
Frame = +3
Query: 189 KGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 368
KGRV EV+L D+ + +++ + I + V + F + + + LR +V++ +
Sbjct: 43 KGRVIEVTLFDILKGDPQQNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSS 101
Query: 369 LIEANIDVETTDGYVLRVFCIGFTNKDTLSQRK 467
+ +DV+T+DGYV R+ + T + + +K
Sbjct: 102 KVNYIVDVKTSDGYVFRLKVLALTYRHLNTSKK 134
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 42.3 bits (95), Expect = 0.005
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 192 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 371
GR E +L +L D+ + F++ +V + F +LT D LR +V++ +
Sbjct: 42 GRTIETTLGELTNDASENNTKLTFKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSK 99
Query: 372 IEANIDVETTDGYVLRVFCIGFTNKDT-LSQRK 467
+EA I V TTD Y +++ + T K SQ K
Sbjct: 100 VEAYITVLTTDDYRVQIQPVAVTTKKADASQEK 132
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 37.5 bits (83), Expect = 0.15
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Frame = +3
Query: 180 EGLKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKK 359
E + GRV VSL +L D + F+++ +V G F+G ++T + +R MVKK
Sbjct: 43 ENVPGRVLTVSLGELIQDYSKQNVRASFKIM--NVAGDAAYTQFNGHEMTKEFVRAMVKK 100
Query: 360 WQTLIEANIDVETTDG-YVLRVFCIGFT-NKDTLSQ 461
+ +++ I V L+V FT N LSQ
Sbjct: 101 RASRVDSTITVTPLGSTRELQVTITAFTINHARLSQ 136
>UniRef50_Q1DMF8 Cluster: Predicted protein; n=1; Coccidioides
immitis|Rep: Predicted protein - Coccidioides immitis
Length = 628
Score = 35.9 bits (79), Expect = 0.47
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 427 QKTRRTYPSVVS--TSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRP 287
QK RRTYP +S T + +IS H + + R +PW+L TLRP
Sbjct: 505 QKERRTYPVQISLDTRQIPNISTRHIVSFVHWDAENRRVPWRLAETLRP 553
>UniRef50_Q41DV7 Cluster: Rod shape-determining protein MreC,
subtype precursor; n=1; Exiguobacterium sibiricum
255-15|Rep: Rod shape-determining protein MreC, subtype
precursor - Exiguobacterium sibiricum 255-15
Length = 294
Score = 32.7 bits (71), Expect = 4.4
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +3
Query: 96 MLKRRSMFTKRQVGTTLVNRTQGTK-----IASEGLKGRVFEVSLAD--LQADSDAERSF 254
M+ R S +R V T + + QG K + ++GL GRV + S +Q SD R+
Sbjct: 123 MIGRTSSEWQRFV-TVNIGKEQGVKANMAVVTADGLVGRVIQTSAYTSLVQLLSDTSRT- 180
Query: 255 RKFRLIAEDVQGRNVLCNFHGMDLTTDKLRW 347
+A+D +G+ V G D T+ L++
Sbjct: 181 NNVSAVADDTKGKGVFGTIEGFDEETNLLKF 211
>UniRef50_A3PDQ5 Cluster: Putative uncharacterized protein; n=1;
Prochlorococcus marinus str. MIT 9301|Rep: Putative
uncharacterized protein - Prochlorococcus marinus
(strain MIT 9301)
Length = 133
Score = 31.9 bits (69), Expect = 7.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 293 TSLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFC 165
T+L I+ +K+ + + F + I ISK D++N + TL C C
Sbjct: 54 TTLGIILEKNNIESKSFYVDI---ISKSDVQNNKISTLHCKIC 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,815,189
Number of Sequences: 1657284
Number of extensions: 10091654
Number of successful extensions: 26286
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 25464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26256
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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