Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D08
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   149   2e-37
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   146   2e-36
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    31   0.12 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   5.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.8  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  149 bits (361), Expect = 2e-37
 Identities = 74/140 (52%), Positives = 100/140 (71%)
 Frame = +3

Query: 60  IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
           +VDPF+R K    +K  + F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D  
Sbjct: 20  VVDPFSR-KDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE- 77

Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
            E SFRK +L  ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  ++TTDGY+ R
Sbjct: 78  -EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCR 136

Query: 420 VFCIGFTNKDTLSQRKTCYA 479
           +F IGFT++     +KT YA
Sbjct: 137 IFVIGFTSRRVNQVKKTTYA 156


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  146 bits (353), Expect = 2e-36
 Identities = 73/140 (52%), Positives = 99/140 (70%)
 Frame = +3

Query: 60  IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
           +VDPF+R K    +K  + F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ D  
Sbjct: 20  VVDPFSR-KEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE- 77

Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
            E +FRK +L  ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  ++TTDGY+ R
Sbjct: 78  -EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCR 136

Query: 420 VFCIGFTNKDTLSQRKTCYA 479
           VF IGFT +     +KT YA
Sbjct: 137 VFVIGFTRRRANQVKKTTYA 156


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 198 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 371
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 372 IEANIDVETT 401
           +E + D+ETT
Sbjct: 144 LETSKDLETT 153


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 423 FCIGFTNKDTLSQRKTCY 476
           FC G  NKDT+   K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 408  YVLRVFCIGFTNKDTLSQRKTC 473
            YV ++   G  NK+T S RKTC
Sbjct: 1721 YVTQLILSGLLNKNTNSIRKTC 1742


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 342 RWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCYA 479
           ++    W  L+       T  GYV+R    GFT+   + + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 143 PCQSHPGNKNCI*GSKGACF 202
           PC  H   K C  G  GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,139
Number of Sequences: 5004
Number of extensions: 39584
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)