Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D08
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 182 2e-46
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 180 7e-46
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 180 7e-46
03_05_0771 - 27588194-27588877 29 2.6
06_01_0144 + 1089090-1091390 28 3.4
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 6.0
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 27 6.0
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 27 6.0
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 27 7.9
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 7.9
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 182 bits (442), Expect = 2e-46
Identities = 91/139 (65%), Positives = 109/139 (78%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
VDPF + K +K S+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAK-KDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED- 78
Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DV+TTDGY+LR+
Sbjct: 79 -QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRL 137
Query: 423 FCIGFTNKDTLSQRKTCYA 479
FCIGFT + ++TCYA
Sbjct: 138 FCIGFTKRRPNQVKRTCYA 156
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 180 bits (437), Expect = 7e-46
Identities = 91/139 (65%), Positives = 108/139 (77%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
VDPF + K +K S+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAK-KDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED- 78
Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
+++RK RL AEDVQG+NVL NF GM TTDKLR +VKKWQTLIEA++DV+TTD Y+LR+
Sbjct: 79 -QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRL 137
Query: 423 FCIGFTNKDTLSQRKTCYA 479
FCIGFT + ++TCYA
Sbjct: 138 FCIGFTKRRPNQVKRTCYA 156
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 180 bits (437), Expect = 7e-46
Identities = 90/139 (64%), Positives = 110/139 (79%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
VDPF++ K +K ++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSK-KDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED- 78
Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
+++RK RL AEDVQGRNVL NF GM TTDKLR +VKKWQTLIEA++DV+TTD Y+LR+
Sbjct: 79 -QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRL 137
Query: 423 FCIGFTNKDTLSQRKTCYA 479
FCIGFT + ++TCYA
Sbjct: 138 FCIGFTKRRPNQVKRTCYA 156
>03_05_0771 - 27588194-27588877
Length = 227
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Frame = -1
Query: 449 ILVGETDAENT*DISVSGLN--VNVGFNQCLP-------FLYHPSEFISGEVHAVEIAEN 297
+L+ TDA+ D V+ LN V V + C P FL+ G+V+A N
Sbjct: 22 VLIRATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSN 81
Query: 296 ITSLDI 279
+T LD+
Sbjct: 82 VTELDV 87
>06_01_0144 + 1089090-1091390
Length = 766
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = -2
Query: 403 SVVSTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISLNL 257
SVVSTS++ I FF ++L S V + L T+R + SSA++L L
Sbjct: 35 SVVSTSVVMFILAAVFFNLNL-FSGVSDVSAVLNPTVRIFLSSALNLFL 82
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 271 SLRMSRDVMFSAISTAWTSPLINSDG 348
SL S D+ FS I +AW + SDG
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDG 434
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 271 SLRMSRDVMFSAISTAWTSPLINSDG 348
SL S D+ FS I +AW + SDG
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDG 491
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 276 EDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEAN 383
E +QG LCN +GM T+ LR + W T I N
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYILEN 212
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 27.1 bits (57), Expect = 7.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3
Query: 411 HIRQWSQRQCWLQ 373
H+ QW+ +CWLQ
Sbjct: 561 HVEQWNTAECWLQ 573
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 138 TTLVNRTQGTKIASEGLKGRVFEV 209
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,358,060
Number of Sequences: 37544
Number of extensions: 287662
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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