Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D08
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          55   3e-08
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           30   1.1  
SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)    29   2.6  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               28   4.6  
SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)                    28   4.6  
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)                   27   6.1  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         27   6.1  
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)               27   6.1  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   27   6.1  
SB_25842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_3911| Best HMM Match : Pepsin-I3 (HMM E-Value=3.7)                  27   8.0  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +3

Query: 366 TLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCYA 479
           TLIEA +DV+TTDGY+LR+FCIGFT +     +KT YA
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYA 39


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 312 GNCREHYVP-GHPQR*V*TCGKTFPHHYQPGDQQGRPQKHAPLDPQMQF 169
           GN +  Y P G+PQ      G   P +Y PG+ Q  P+ + P +PQ ++
Sbjct: 370 GNPQSRYYPSGNPQPRYYPSGNPQPRYYLPGNPQ--PRYYLPGNPQPRY 416



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 312 GNCREHYVP-GHPQR*V*TCGKTFPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 157
           GN +  Y P G+PQ     CG   P +Y  G+ Q  P+ +   +PQ  FL  G
Sbjct: 189 GNPQPKYYPSGNPQSRYYPCGNPQPKYYPSGNPQ--PRYYPSGNPQPWFLPSG 239


>SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)
          Length = 700

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = -1

Query: 239 ITISLEISKGDLKNTPL*TLRCNFCSLGAIDKGGAHLSLGEHGPAL 102
           I  SLEI K      PL   + NF SL  +D GG+ L  G H P L
Sbjct: 658 IKTSLEIKK------PLSDWQPNFTSLIQVDIGGSRLQRGRHVPLL 697


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 350 HPSEFISGEVHAVEIAENITSLDILSDKSELAERP 246
           +PSE I    HAVE AE +  L  LS+ S  ++ P
Sbjct: 15  NPSEGIKITTHAVEQAEQLERLHRLSESSAASQVP 49


>SB_23740| Best HMM Match : PAN (HMM E-Value=0.0056)
          Length = 265

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 202 LRSPLLISRLIVMRKGLSASSDLSLRMSRDVMF 300
           LR P+L++ LI + +GL+  SD S  + RD  F
Sbjct: 3   LRYPVLLAVLISLARGLALESDNSNTIQRDDYF 35


>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
          Length = 660

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 368 CLPFLYHPSEFISGEVHAVEIAENITSLDILSDKSE 261
           C+P L   S+ + GE+ AV    ++ S D+L DK++
Sbjct: 30  CVPLLREDSDAVDGELSAV---SDVESSDLLYDKAD 62


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 83   KDWYDVKAPVHVHQETSGHHPCQSHPGNKNC 175
            K+WY      H    T G++ C +  G+K C
Sbjct: 1950 KNWYGKNCRKHCQTSTRGNYRCDNVTGDKIC 1980



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +2

Query: 89   WYDVKAPVHV--HQETSGHHPCQSHPGNKNC 175
            WY     ++   H  +SGH+ C +  G K C
Sbjct: 1136 WYGGTCSIYCLPHNGSSGHYDCDASSGRKTC 1166



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 86   DWYDVKAPVHVHQ--ETSGHHPCQSHPGNKNCI 178
            +WY V    +  +  + SGH+ C++  G K C+
Sbjct: 2253 NWYGVNCSKYCKEKDDNSGHYRCENSTGEKICL 2285


>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
          Length = 443

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 80  VKDWYDVKAPVHVHQETSGHHPCQSHPGNKN 172
           ++DWY     VH   +  GH  C    G ++
Sbjct: 376 LEDWYGENCTVHCVADKEGHFTCDGKTGQRH 406


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 83  KDWYDVKAPVHVHQETSGHHPCQSHPGNKNC 175
           K+WY      H    T G++ C +  G+K C
Sbjct: 9   KNWYGKNCRKHCQTSTRGNYRCDNVTGDKIC 39


>SB_25842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 356 LYHPSEFISGEVHAVEIAENITSLDILSDKSELAER 249
           L  P++ +S ++H  E+  +  S  +LSD SE +ER
Sbjct: 27  LIQPAKIVS-DIHETELCPSNDSKFVLSDSSEQSER 61


>SB_3911| Best HMM Match : Pepsin-I3 (HMM E-Value=3.7)
          Length = 393

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 279 PQR*V*TCGKTFPHHYQPGDQQGRPQKHAP 190
           P R     GK  P+HYQ  D Q   ++H P
Sbjct: 333 PHRSATEIGKLRPYHYQQQDMQLPTERHLP 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,586
Number of Sequences: 59808
Number of extensions: 335583
Number of successful extensions: 759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)