Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D08
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   214   6e-56
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   214   6e-56
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   214   6e-56
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   204   5e-53
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   169   1e-42
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...    93   2e-19
BT005203-1|AAO62632.1|  273|Drosophila melanogaster GH10582p pro...    28   7.6  
AE014297-3153|AAF55994.1|  273|Drosophila melanogaster CG13848-P...    28   7.6  

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  214 bits (522), Expect = 6e-56
 Identities = 105/140 (75%), Positives = 116/140 (82%)
 Frame = +3

Query: 60  IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
           +VDPF+R K    +K  +MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D
Sbjct: 21  VVDPFSR-KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDID 79

Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
            ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ +T DGY+LR
Sbjct: 80  PERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLR 139

Query: 420 VFCIGFTNKDTLSQRKTCYA 479
           VFCIGFT KD  SQRKTCYA
Sbjct: 140 VFCIGFTAKDQQSQRKTCYA 159


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  214 bits (522), Expect = 6e-56
 Identities = 105/140 (75%), Positives = 116/140 (82%)
 Frame = +3

Query: 60  IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
           +VDPF+R K    +K  +MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D
Sbjct: 21  VVDPFSR-KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDID 79

Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
            ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ +T DGY+LR
Sbjct: 80  PERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLR 139

Query: 420 VFCIGFTNKDTLSQRKTCYA 479
           VFCIGFT KD  SQRKTCYA
Sbjct: 140 VFCIGFTAKDQQSQRKTCYA 159


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  214 bits (522), Expect = 6e-56
 Identities = 105/140 (75%), Positives = 116/140 (82%)
 Frame = +3

Query: 60  IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSD 239
           +VDPF+R K    +K  +MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D
Sbjct: 21  VVDPFSR-KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDID 79

Query: 240 AERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLR 419
            ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ +T DGY+LR
Sbjct: 80  PERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLR 139

Query: 420 VFCIGFTNKDTLSQRKTCYA 479
           VFCIGFT KD  SQRKTCYA
Sbjct: 140 VFCIGFTAKDQQSQRKTCYA 159


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  204 bits (498), Expect = 5e-53
 Identities = 102/141 (72%), Positives = 113/141 (80%), Gaps = 1/141 (0%)
 Frame = +3

Query: 60  IVDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADS 236
           +VDPF+R K    +K  +MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D 
Sbjct: 21  VVDPFSR-KDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDI 79

Query: 237 DAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVL 416
           D E SFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ +T DGY+L
Sbjct: 80  DPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLL 139

Query: 417 RVFCIGFTNKDTLSQRKTCYA 479
           RVFCIGFT KD  SQRKTCYA
Sbjct: 140 RVFCIGFTAKDQQSQRKTCYA 160


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  169 bits (412), Expect = 1e-42
 Identities = 80/96 (83%), Positives = 84/96 (87%)
 Frame = +3

Query: 192 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 371
           GRVFEVSLADLQ D D ERSFRKFRLIAEDVQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 372 IEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCYA 479
           IEA ++ +T DGY+LRVFCIGFT KD  SQRKTCYA
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYA 109


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/54 (77%), Positives = 46/54 (85%)
 Frame = +3

Query: 318 MDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTLSQRKTCYA 479
           MDLTTDK R MVKKWQTLIEA ++ +T DGY+LRVFCIGFT KD  SQRKTCYA
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYA 54


>BT005203-1|AAO62632.1|  273|Drosophila melanogaster GH10582p
           protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +1

Query: 85  RLVRC*SAGPCSPRDKWAPPLSIAPREQKLHLRV*RGVFLRSPLLISRLIVMRKGLSASS 264
           R V   +A PC P+       + APR     L   R +F+ +P + SRL V R+G S S 
Sbjct: 176 RSVESWTAYPCQPK---LLEFTNAPRHVNFFLNTFR-IFM-TPKIRSRLFVRREGTSVSC 230

Query: 265 D 267
           D
Sbjct: 231 D 231


>AE014297-3153|AAF55994.1|  273|Drosophila melanogaster CG13848-PA
           protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +1

Query: 85  RLVRC*SAGPCSPRDKWAPPLSIAPREQKLHLRV*RGVFLRSPLLISRLIVMRKGLSASS 264
           R V   +A PC P+       + APR     L   R +F+ +P + SRL V R+G S S 
Sbjct: 176 RSVESWTAYPCQPK---LLEFTNAPRHVNFFLNTFR-IFM-TPKIRSRLFVRREGTSVSC 230

Query: 265 D 267
           D
Sbjct: 231 D 231


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,937,491
Number of Sequences: 53049
Number of extensions: 498250
Number of successful extensions: 1234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)