Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D08
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 173 4e-44
AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine re... 28 4.0
AF016673-4|AAB66125.2| 743|Caenorhabditis elegans Hypothetical ... 27 5.3
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 27 5.3
L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease pr... 27 7.0
L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease pr... 27 7.0
L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease pr... 27 7.0
AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered cut... 27 7.0
AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered cut... 27 7.0
AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered cut... 27 7.0
AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered cut... 27 7.0
AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered cut... 27 7.0
AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cut... 27 7.0
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 27 9.3
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 27 9.3
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 173 bits (422), Expect = 4e-44
Identities = 90/138 (65%), Positives = 103/138 (74%)
Frame = +3
Query: 63 VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
VDPF+R K +K +MF RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL +++
Sbjct: 20 VDPFSR-KEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNS 75
Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
E FRKF+LIAEDVQG+NVL NFH M +T DKL +VKKW TLIEAN V+TTDGY LRV
Sbjct: 76 EADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRV 135
Query: 423 FCIGFTNKDTLSQRKTCY 476
F I FT K +KT Y
Sbjct: 136 FVIAFTKKSVNQVKKTSY 153
>AF016415-8|AAW88415.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 32 protein.
Length = 297
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 385 MLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 263
++ ++ V H F+ H L V +PW T R + AISL
Sbjct: 65 VILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105
>AF016673-4|AAB66125.2| 743|Caenorhabditis elegans Hypothetical
protein T06D4.3 protein.
Length = 743
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 294 NVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRVFCIGFTNKDTL 455
NVL N+ + T+ + +KK T + I +E D RV+ + +K+ L
Sbjct: 379 NVLANYLVLKFLTESVEEFIKKNSTALCEEIVMEKLDYAAFRVYYQNYFDKENL 432
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 326 EVHAVEIAENITSLDILSDKSELAE 252
E+H +E AE++ SL +L KSE+ +
Sbjct: 63 EMHIIEPAEHMKSLKVLMQKSEIEQ 87
>L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease
protein.
Length = 570
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 65 RDMQHLVLRTANWKPLENNPGWSRNG 90
>L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease
protein.
Length = 658
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease
protein.
Length = 684
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered
cuticle protein 4, isoformf protein.
Length = 666
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered
cuticle protein 4, isoforme protein.
Length = 699
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered
cuticle protein 4, isoforma protein.
Length = 670
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered
cuticle protein 4, isoformb protein.
Length = 730
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered
cuticle protein 4, isoformc protein.
Length = 827
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered
cuticle protein 4, isoformd protein.
Length = 942
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 286 RDVMFSAISTAWTSPLINSDGW*RNG 363
RD+ + TA PL N+ GW RNG
Sbjct: 438 RDMQHLVLRTANWKPLENNPGWSRNG 463
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 246 FPHHYQPGDQQGRPQKHAPLDPQMQ 172
+ ++ Q QQGRPQ++A PQ Q
Sbjct: 34 YGYNNQQQQQQGRPQQYAGYPPQRQ 58
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 413 DISVSGLNVNVGFNQCLPFLYHPSEFISGEVHAVEIAENITSLDILSD 270
D S++G+NV G++ +PF ++G VH +E EN ++ +D
Sbjct: 296 DSSMNGVNVPSGYSMDIPFKMQHRSKLTG-VHCIE--ENDEQIEASTD 340
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 208 TSKTRPFRPSDAIFVPWVRLTRVVPTCLLV 119
TSK +P R D I V R T CL V
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAV 2204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,054,857
Number of Sequences: 27780
Number of extensions: 242400
Number of successful extensions: 627
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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