Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D08
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.32 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 249 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI----DVETTDGYVL 416
           SFR  R+ A +  GRN    + G      K+   +++  +++  ++    DV   D Y  
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVNIIDKYSR 469

Query: 417 RVFCIGF 437
            +F + F
Sbjct: 470 IIFPVSF 476


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 231 DSDAERSFRKFRLIAEDVQGRNVLCN 308
           D  +++  R++RL AED+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +3

Query: 312 HGMDLTTDKLRWMVKKWQTLIEANID 389
           +GM +  DK+   + +W+  + +N++
Sbjct: 54  NGMQIWNDKVFITIPRWKNGVPSNLN 79


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 208 SPLLISRLIVMRKGLSASSDLSLRMSRDVMFSAISTA 318
           S  LI+ LIV+      ++D+SL  + D M   I T+
Sbjct: 443 SAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,648
Number of Sequences: 438
Number of extensions: 2828
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)