Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D08
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   185   1e-47
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           181   3e-46
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   8.7  
At1g66320.1 68414.m07531 F-box family protein contains F-box dom...    27   8.7  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  185 bits (451), Expect = 1e-47
 Identities = 93/139 (66%), Positives = 108/139 (77%)
 Frame = +3

Query: 63  VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
           VDPF++ K    +K  S+FT R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D 
Sbjct: 21  VDPFSK-KDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED- 78

Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
             ++RK RL AEDVQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DV+TTD Y LR+
Sbjct: 79  -NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRL 137

Query: 423 FCIGFTNKDTLSQRKTCYA 479
           FCI FT +     ++TCYA
Sbjct: 138 FCIAFTKRRANQVKRTCYA 156


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  181 bits (440), Expect = 3e-46
 Identities = 92/139 (66%), Positives = 106/139 (76%)
 Frame = +3

Query: 63  VDPFTRLKTGTMLKRRSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 242
           VDPF++ K    +K    FT R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D 
Sbjct: 21  VDPFSK-KDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED- 78

Query: 243 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVETTDGYVLRV 422
             ++RK RL AEDVQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DV+TTDGY LR+
Sbjct: 79  -NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRM 137

Query: 423 FCIGFTNKDTLSQRKTCYA 479
           FCI FT +     ++TCYA
Sbjct: 138 FCIAFTKRRANQVKRTCYA 156


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 382 LASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISLNL 257
           L   S CHF T+H  L  + + PW +    RP   + ++L +
Sbjct: 232 LLPASDCHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRI 272


>At1g66320.1 68414.m07531 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 457

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 345 WMVKKWQTLIEANIDVETTDGYVLRVFCIGFT-NKDTLSQRK 467
           +++KK  +L+EANI VE         FC+G   N + LS+RK
Sbjct: 267 FIIKKLSSLVEANIKVEFN-------FCVGKKFNPNDLSKRK 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,231
Number of Sequences: 28952
Number of extensions: 222852
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)