Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D07
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0565 + 4141592-4141879 32 0.22
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 29 1.6
02_05_0516 + 29694631-29695182 29 2.1
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537... 29 2.1
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 2.7
01_01_0707 - 5453933-5454619 29 2.7
10_08_0636 + 19478723-19478869,19479984-19480212,19480321-194804... 28 3.6
06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606 28 4.8
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 28 4.8
03_05_0687 + 26760855-26760989 28 4.8
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 28 4.8
11_06_0702 + 26432798-26432890,26434021-26434416 27 6.3
05_07_0019 - 27090791-27090945,27091775-27091963,27092635-270926... 27 6.3
02_02_0111 - 6904318-6904767 27 6.3
12_02_0767 + 22986313-22986422,22986968-22987316 27 8.4
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 27 8.4
>02_01_0565 + 4141592-4141879
Length = 95
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 147 VKLNEIGGWLGRRSKTPSAVMGACSRAWWRWQHKYVQPKKVGMAPFFQLLVGSMTFFYMI 326
+K+ E+ G+L R + V + +A R+ KY++ P F ++ G M F Y+I
Sbjct: 13 MKVREVPGYLKPRLSWEN-VKKSSDQAVDRYIDKYIETSSP--EPLFHVIYGLMAFSYLI 69
Query: 327 NYGKMKHH 350
N K + H
Sbjct: 70 NLPKERRH 77
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 263 KSRHGSILPTACWQ-HDFLLYDQLWQDEAPQELQVPLKE 376
+ R G + P AC++ + ++YD + Q + P+ L+ PL+E
Sbjct: 1550 RGRAGRVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQE 1588
>02_05_0516 + 29694631-29695182
Length = 183
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 171 WLGRRSKT-PS--AVMGACSRAWWRWQHKYVQPKKVGMA 278
W RRSK+ PS A G + WW W ++ KK G A
Sbjct: 67 WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105
>02_01_0721 -
5373449-5373603,5373912-5373981,5374473-5374620,
5374755-5374870,5374955-5375033,5375163-5375233,
5376201-5376344,5376439-5376592,5376906-5376941,
5377145-5377226,5377315-5377408,5377993-5378062,
5378177-5378274,5378745-5378827,5379335-5379428,
5379533-5380036
Length = 665
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 42 EKMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFG 143
E + FGDY + + P DPA GKP + +G
Sbjct: 596 EGVVFGDYGSDLSSGPKVPGDPAGARGKPGSGYG 629
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 57 GDYPKEYNPAVHGPYDPARYYGKPDTPFGQVKLNEIGGWLGRRSKTPSAV 206
GD+ Y P Y P Y+G+P P ++ LG TPS V
Sbjct: 15 GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQH----LGPHGVTPSTV 60
>01_01_0707 - 5453933-5454619
Length = 228
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 120 GKPDTPFGQVKLNEIGGWLGRRSKTPSAVMGACSRAWWRWQHKYVQPKK 266
GK G+ K ++GG G A G RAW +W + +P+K
Sbjct: 20 GKKQQVAGKRKREDVGG--GGEQAAAVAYRGVRMRAWGKWVSEIREPRK 66
>10_08_0636 +
19478723-19478869,19479984-19480212,19480321-19480414,
19480598-19480721,19480922-19481023,19481103-19481254,
19481353-19481446,19481642-19481827
Length = 375
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = +3
Query: 105 PARYYGKPDTPFGQVKLNEIGGWLGRRSKTPSAVMGACSRAWWRWQHKYVQPKKVGMAPF 284
P P PF + GG L RR P+A + +W WQ V P V F
Sbjct: 4 PVTTRAAPAMPFAP-QPRTAGGGLLRRPSPPAAALRIAPPLFWPWQKVKVGPLSVSPMGF 62
>06_01_0130 - 1010901-1011932,1012627-1012913,1013516-1013606
Length = 469
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 193 VLLLRPNHPPISFSFTCPKGVSGLP**RAGSYGPWTAGLYSFG*SPKAIFSHKFIKYYR 17
+L + P SF F C GV G + S+G AG+ + G P+++ S Y R
Sbjct: 229 LLTITPATAVRSFQFGCSHGVQG-----SFSFGSSAAGIMALGGGPESLVSQTAATYGR 282
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = -2
Query: 308 HAANKQLEE---WSHAYFFRLNIFVLPPPPGSAASAHNS*RSLTPATQPSADFIQFYLSK 138
H +NK+ EE + A + LPPPP + S SL P+ P + S
Sbjct: 158 HPSNKRFEERKSCTDAGMLPGPLLPLPPPPPPELVVYPSVPSLPPSATPPSSSSSIGSSI 217
Query: 137 GCIRLAIITGWII 99
+ L +IT I+
Sbjct: 218 AIVVLVVITTAIV 230
>03_05_0687 + 26760855-26760989
Length = 44
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 284 EWSHAYFFRLNIFVLPPPP 228
EWSH Y + F+LPPPP
Sbjct: 27 EWSH-YEAKRRTFILPPPP 44
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 235 LHQARLQAPITAEG-VLLLRPNHPPISFSFTCP 140
+H A L + T+ G +LLL P PP S S +CP
Sbjct: 25 IHTAFLHSHATSFGTLLLLNPTLPPNSSSSSCP 57
>11_06_0702 + 26432798-26432890,26434021-26434416
Length = 162
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 174 LGRRSKTPSAVMGACSRAW 230
+GRRS +PS+ + ACS AW
Sbjct: 1 MGRRS-SPSSALNACSHAW 18
>05_07_0019 -
27090791-27090945,27091775-27091963,27092635-27092694,
27092793-27092981,27093116-27093209,27093319-27093428,
27093657-27093969
Length = 369
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 165 GGWLGRRSKTPSAVMGACSRAWWRWQHKYVQ 257
GGW G R K +AV+ C + W H Y +
Sbjct: 299 GGWGGGRGKDVAAVVRVCGGGF--WPHAYFE 327
>02_02_0111 - 6904318-6904767
Length = 149
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 323 HIEES-HAANKQLEEWSHAYFFRLNIFVLPPPP 228
H E+S H +L ++ H++ L++ V+ PPP
Sbjct: 45 HTEQSSHGCRCKLHQYRHSHVHALDMVVIGPPP 77
>12_02_0767 + 22986313-22986422,22986968-22987316
Length = 152
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 326 DHIEESHAANKQLEEWSHAYFFRLN-IFVLPPPPGSAASAH 207
D I E+ K++ + + F RL+ I ++PPPP ++ +H
Sbjct: 50 DLILENGGLGKEITDTIESVFCRLSGIDMMPPPPSTSIPSH 90
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 96 PYDPARYYGKPDTPFGQVKLNEIGGWLGRRSKTPS 200
P ++Y+ KP+TP G K+N W +S +PS
Sbjct: 268 PSSSSQYHSKPNTPVGHPKVNPQLEW-KPKSVSPS 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,790,856
Number of Sequences: 37544
Number of extensions: 305286
Number of successful extensions: 1121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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