Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D07
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   7e-04
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         30   0.92 
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.92 
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_37509| Best HMM Match : PAE (HMM E-Value=0)                         27   6.5  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         27   6.5  
SB_56531| Best HMM Match : SLH (HMM E-Value=1.1)                       27   6.5  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 27   6.5  
SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24)          27   6.5  
SB_19486| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +3

Query: 132 TPFGQVKLNEIGGWLGRRSKTPSAVMGACSRAWWRWQHKYVQPKKVGMAPFFQLLVGSMT 311
           T FG+ KL   G ++ R +   +   G  SR W  ++ KYV  K   M PF+  +  +  
Sbjct: 2   TSFGETKLKNAGDYVVRNASLENMWRGM-SRVWNSYRAKYVTCKNARMTPFWHAVFVAAA 60

Query: 312 FFYMINYGKMK 344
             Y I Y  +K
Sbjct: 61  LNYAIEYNHLK 71


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 37   CEKKWLSVITRKNTTLLSTGRMIQPVIMASL 129
            CEK W SVI+R+ TTL+   R +  V +A+L
Sbjct: 1093 CEKAWTSVISRQ-TTLVRMERPVSTVTVATL 1122


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 282 FFQLLVGSMTFFYMINYGKMKHHRNYKYH*RSNSTIN 392
           FF L    M FFY+  Y K++HH+    H R   + N
Sbjct: 184 FFVLPFALMCFFYLKIYLKIRHHKKQTAHMRRGPSTN 220


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 308  HAANKQLEEWSHAYFFRLNIFVLPPP 231
            H+A K LE W+  +  RL+++  PPP
Sbjct: 2285 HSAMKMLELWTQTFLGRLDMYQGPPP 2310


>SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/57 (21%), Positives = 30/57 (52%)
 Frame = +3

Query: 222 RAWWRWQHKYVQPKKVGMAPFFQLLVGSMTFFYMINYGKMKHHRNYKYH*RSNSTIN 392
           R +  ++H  +    V +  F +L V   + ++ + Y   +H+R+Y+Y+  +  T++
Sbjct: 21  RNYRHYRHTVITVSTVNLLAFVKLSVYVTSPYFPVVYRSNRHYRHYRYYRHTVITVS 77


>SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 YGKPDTPFGQVKLNEIGGW 173
           YG+   PFG+ KL +IG W
Sbjct: 164 YGEQKIPFGEQKLEQIGPW 182


>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
          Length = 483

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 263 KSRHGSILPTACWQHDFLLYDQLW 334
           +SR   +L T+C +H   LYD  W
Sbjct: 418 RSRTSGLLLTSCMEHSQSLYDDTW 441


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 263  KSRHGSILPTACWQHDFLLYDQLW 334
            +SR   +L T+C +H   LYD  W
Sbjct: 1187 RSRTSGLLLTSCMEHSQSLYDDTW 1210


>SB_56531| Best HMM Match : SLH (HMM E-Value=1.1)
          Length = 151

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -1

Query: 165 RFHSVLPVQRVYQACHNNGLDHTARGQQGCILSGNHRKPFFLTNLSNTIENR 10
           RF S L  Q        + ++ T    Q    +GNH KPF      N + NR
Sbjct: 93  RFISCLTPQNPVYRLVQDRIEATTHSYQLRTRTGNHIKPFATNRFGNFVTNR 144


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 96  PYDPARYYGKPDTPF-GQVKLNEIGGWLGRRSKTPSAVMGACSRAWW 233
           P  P R Y  PD+PF G+  LN       R+S +P+      +  +W
Sbjct: 259 PPAPVRLYMHPDSPFTGEQLLNRSS--RSRKSSSPTTTQTTMATIYW 303


>SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24)
          Length = 405

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 171 WLGRRSKTPSAVMGACSRAWWRWQHKYVQPKKVGMAPFFQLLVGSMTFFYMINYGKMK-- 344
           + G    TP  VM + ++ W R++    QP  VG   F+ +   S   +   N G +K  
Sbjct: 318 YCGEFEVTPRPVMSSSNKLWIRFRSNSSQP-SVG---FYAVYFPSCNAYLTNNSGVIKSP 373

Query: 345 HHRNYKYH 368
           +H N  YH
Sbjct: 374 NHPNEYYH 381


>SB_19486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 321 MINYGKMKHHRNYKY-H*RSNSTINLFVHENIIIQD 425
           ++NY K  HHR   Y   +    I  FV++N+++ D
Sbjct: 10  IVNYPKQSHHRTGGYIREKLQGYIREFVYQNLMLDD 45


>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 220 LQAPITAEGVLLLRPNHPP 164
           L  PI   GV +LRP+HPP
Sbjct: 51  LDEPIPEIGVPILRPSHPP 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,375
Number of Sequences: 59808
Number of extensions: 332598
Number of successful extensions: 889
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)