Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D07
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical pr...    67   8e-12
Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical ...    27   5.7  

>Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical
           protein R53.4 protein.
          Length = 153

 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 32/69 (46%), Positives = 38/69 (55%)
 Frame = +3

Query: 45  KMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQVKLNEIGGWLGRRSKTPSAVMGACSR 224
           K   G + K +N  VHGPY   RYYGK DT F  VKL ++  W+ RR KTPSA      R
Sbjct: 43  KTEVGLFDKRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMR 102

Query: 225 AWWRWQHKY 251
             WR  + Y
Sbjct: 103 NIWRVHNLY 111


>Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical
           protein Y57G11B.6 protein.
          Length = 129

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 278 SHAYFFRLNIFVLPPPPGSAASAHNS*RSLTPATQPSA 165
           +H Y   +  F   P P S A  HNS  S  P  +PSA
Sbjct: 71  NHGYSAHVTGFEAHPSPPSTAQHHNSTMSSLPPRRPSA 108


>Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical
           protein E03H4.5 protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 144 VQRVYQACHNNGLDHTARGQQGCILSGNHRKPFFLTNLSNTIEN 13
           V++++    NN L+H A  Q+  +   N   PFF  +L N + N
Sbjct: 377 VEKLFTYFPNNTLEHVASMQKTAMTIFNGSLPFFSLDLINGVNN 420


>AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3a protein.
          Length = 236

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 245 VLPPPPGSAASAHNS*RSLTPATQPSA 165
           +LPPPPG+ +   NS  S T  T  S+
Sbjct: 182 LLPPPPGAGSMIRNSRPSTTTTTASSS 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,888
Number of Sequences: 27780
Number of extensions: 256846
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)