Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D07
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g33406.1 68418.m03990 hAT dimerisation domain-containing prot... 29 2.3
At2g25180.1 68415.m03011 two-component responsive regulator fami... 28 4.0
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 27 5.3
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F... 27 5.3
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F... 27 5.3
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 27 7.0
At2g43970.2 68415.m05468 La domain-containing protein contains P... 27 7.0
At2g43970.1 68415.m05467 La domain-containing protein contains P... 27 7.0
At2g02835.1 68415.m00229 hypothetical protein 27 7.0
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 27 9.3
At5g39400.1 68418.m04773 pollen specific phosphatase, putative /... 27 9.3
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 27 9.3
>At5g33406.1 68418.m03990 hAT dimerisation domain-containing protein
low similarity to transposase [Fusarium oxysporum f. sp.
lycopersici] GI:3126916; contains Pfam profile PF05699:
hAT family dimerisation domain
Length = 485
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 45 KMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQ---VKLNEI-GGWLG 179
KMAF + ++ +H P A YY P+ +GQ + E+ GG+LG
Sbjct: 123 KMAFEIIDRRWDIQLHRPLHAAGYYLNPEFHYGQPDDIGYEEVLGGFLG 171
>At2g25180.1 68415.m03011 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 596
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 308 HAANKQLEEWSHAYFFRLNIFVLPPPPGSAASAHNS*RSLTPATQPSADFIQF 150
H NK+LE WS+A ++ PPPP +++ N ++P D +++
Sbjct: 426 HQINKRLEHWSNA----VSSSTHPPPPAHNSNSINHQFDVSPLPHSRPDPLEW 474
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 239 PPPPGSAASAHNS*RSLTPATQPSADFIQF 150
PPPP + H R +TP+ P + + F
Sbjct: 155 PPPPPPPSKTHEPSRRITPSPPPPSKILPF 184
>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 60 DYPKEYNPAVHGPYDPARYYG 122
DYP EY AV G YD YG
Sbjct: 67 DYPNEYITAVGGSYDTVFGYG 87
>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 60 DYPKEYNPAVHGPYDPARYYG 122
DYP EY AV G YD YG
Sbjct: 67 DYPNEYITAVGGSYDTVFGYG 87
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 27.1 bits (57), Expect = 7.0
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 48 MAFGDYPKEYNPAVHGPYDPARYYGKPDTPFGQVKLNEIGGWLGRRSKTP-SAVMG--AC 218
MA+ Y ++P V GP PA + P P G+ + + WL P AV+G C
Sbjct: 202 MAYDFYGPGWSP-VTGP--PAALFHDPSNPAGRSGNSGLRKWLDEAKLPPKKAVLGFPYC 258
Query: 219 SRAW 230
AW
Sbjct: 259 GWAW 262
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -2
Query: 206 NS*RSLTPATQPSADFIQFYLSKGCIRLAIITGWIIRPVDSRVVFFRVITESHFFSQIYQ 27
N+ L Q SA K R++ IT I + SR++ + E H + + +
Sbjct: 244 NNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMK 303
Query: 26 ILSKIG 9
I S +G
Sbjct: 304 IFSTVG 309
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -2
Query: 206 NS*RSLTPATQPSADFIQFYLSKGCIRLAIITGWIIRPVDSRVVFFRVITESHFFSQIYQ 27
N+ L Q SA K R++ IT I + SR++ + E H + + +
Sbjct: 244 NNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMK 303
Query: 26 ILSKIG 9
I S +G
Sbjct: 304 IFSTVG 309
>At2g02835.1 68415.m00229 hypothetical protein
Length = 198
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 66 PKEYNPAVHGPYDPARYYGKPDTPF 140
P+EY ++ PY P PD+PF
Sbjct: 121 PEEYEDSLISPYIPEAVLRSPDSPF 145
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 290 LEEWSHAYFFRLNIFVLPPP 231
L++WS Y+F FVL PP
Sbjct: 145 LKKWSFRYWFAFPAFVLDPP 164
>At5g39400.1 68418.m04773 pollen specific phosphatase, putative /
phosphatase and tensin, putative (PTEN1) identical to
phosphatase and tensin homolog [Arabidopsis thaliana]
GI:21535746
Length = 412
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 48 MAFGDYPKEYNPAVHGPYDPARYYGKPDT-PF 140
M D+ K YN + YDP +YG+ + PF
Sbjct: 87 MRHPDHYKVYNLCIEESYDPDNFYGRVERFPF 118
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 26.6 bits (56), Expect = 9.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 181 RPNHPPISFSFTC 143
RP+HPP+S F+C
Sbjct: 31 RPSHPPLSICFSC 43
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,741
Number of Sequences: 28952
Number of extensions: 232603
Number of successful extensions: 680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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