Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D06
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   3.1  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    26   3.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.3  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 301 ENALMLVLRSPSAAA*RTFQSPTGETHALALTLRHILH 414
           + A M  L+ P  A     +SP GE H + ++ R ILH
Sbjct: 312 KKAEMPPLQVPDLAYIEFSRSPIGELHGVVISHRTILH 349


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 301 ENALMLVLRSPSAAA*RTFQSPTGETHALALTL 399
           E AL L+L +P        QS TG+T A ALT+
Sbjct: 142 EKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 437  RRRSSWYTCS 408
            RR+ SWYTCS
Sbjct: 1101 RRQDSWYTCS 1110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,925
Number of Sequences: 5004
Number of extensions: 29871
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)