Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D06
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614...    29   1.8  
02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131     28   3.1  
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305...    27   5.4  
01_07_0224 - 42121011-42122486                                         27   9.5  

>03_02_0173 +
           6138406-6138628,6139769-6139857,6139922-6140608,
           6140682-6140834,6140922-6141290
          Length = 506

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 107 LSGGIARDYCKQHNKIMTDNTATEIKEKKYHF 12
           + GGIARDY K+ ++I+  ++ T +K+ +  F
Sbjct: 103 MEGGIARDYNKKVDRILKKHSGTGMKKFEIEF 134


>02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131
          Length = 486

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 437 RRRSSWYTCSMCRRVKASA*VSPVGDW 357
           RRR   Y   + RR  A+A  +P+GDW
Sbjct: 209 RRRQGTYALDIARRRPAAAAWTPLGDW 235


>03_01_0392 +
           3051469-3051876,3052414-3052832,3053992-3054061,
           3054923-3055016,3056587-3056907,3057298-3057403,
           3058807-3058887,3059336-3059402,3059715-3060239,
           3060328-3060553,3060628-3060967,3061311-3061659,
           3061755-3062357
          Length = 1202

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 300 RKRIDACLAQPFRSGLTHVPVTNWGNSCTRFDSTTHTACVPGRPSSITCFC 452
           +K+ DAC A  F + L   P+ N    C   +   H  C+    S + C C
Sbjct: 266 KKQKDACTAPRFENIL--FPLWNILKDCFNCEEQAHGGCIDDFLSHLMCCC 314


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 439 IEEGLPGTHAVCVVESKRVHEFPQLVTGT 353
           I  GL   H V ++  KR H FP  + GT
Sbjct: 236 IISGLSDYHVVDLLHDKRTHCFPGAIVGT 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,476,909
Number of Sequences: 37544
Number of extensions: 179682
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)