Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D06
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  27   9.7  

>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 355 TCVRPLRKGCARQASMRFRPIVIINYA---DCNRFLTRKFTV*NRTSNLTELCYLITFLV 185
           T ++P    CAR   +   P +++ Y    DC +   RKF +   T  +  +  L  FLV
Sbjct: 157 TRLKPPEGACARALWVFTLPSILVFYVTIPDCRKKTWRKFYLVTFTVAVIWMAVLSYFLV 216

Query: 184 WL 179
           W+
Sbjct: 217 WM 218


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 242 CKLSC*KSITVCVIDNYYRTKTH*CLSCAALPQ 340
           C L C  ++T CVI    R  T  CL C A+ Q
Sbjct: 199 CGLQC-VAVTQCVISVSPRQDTTCCLECVAVTQ 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,253
Number of Sequences: 59808
Number of extensions: 227663
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)