Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D06
         (456 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021962-1|AAH21962.2|  791|Homo sapiens PHF15 protein protein.        29   5.7  
BC009307-1|AAH09307.2|  574|Homo sapiens PHF15 protein protein.        29   5.7  
AK074123-1|BAB84949.1|  639|Homo sapiens FLJ00195 protein protein.     29   5.7  
AJ251833-1|CAB94935.1|  576|Homo sapiens hypothetical protein pr...    29   5.7  
BC126260-1|AAI26261.1|  155|Homo sapiens transmembrane inner ear...    29   10.0 
BC126258-1|AAI26259.1|  155|Homo sapiens transmembrane inner ear...    29   10.0 
AY081842-1|AAL89820.1|  155|Homo sapiens transmembrane inner ear...    29   10.0 

>BC021962-1|AAH21962.2|  791|Homo sapiens PHF15 protein protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 345 LTHVPVTNWGNSCTRFDSTTHTACVPGRPSSITCF 449
           ++H+P + W  SC+     T T      PS +T F
Sbjct: 299 ISHIPASRWALSCSLCKECTGTCIQCSMPSCVTAF 333


>BC009307-1|AAH09307.2|  574|Homo sapiens PHF15 protein protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 345 LTHVPVTNWGNSCTRFDSTTHTACVPGRPSSITCF 449
           ++H+P + W  SC+     T T      PS +T F
Sbjct: 83  ISHIPASRWALSCSLCKECTGTCIQCSMPSCVTAF 117


>AK074123-1|BAB84949.1|  639|Homo sapiens FLJ00195 protein protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 345 LTHVPVTNWGNSCTRFDSTTHTACVPGRPSSITCF 449
           ++H+P + W  SC+     T T      PS +T F
Sbjct: 376 ISHIPASRWALSCSLCKECTGTCIQCSMPSCVTAF 410


>AJ251833-1|CAB94935.1|  576|Homo sapiens hypothetical protein
           protein.
          Length = 576

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 345 LTHVPVTNWGNSCTRFDSTTHTACVPGRPSSITCF 449
           ++H+P + W  SC+     T T      PS +T F
Sbjct: 84  ISHIPASRWALSCSLCKECTGTCIQCSMPSCVTAF 118


>BC126260-1|AAI26261.1|  155|Homo sapiens transmembrane inner ear
           protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 16  WYFFSLISVAVLSVIILLCCL 78
           W+   + S+ VLS+II LCC+
Sbjct: 57  WHVVGIFSLFVLSIIITLCCV 77


>BC126258-1|AAI26259.1|  155|Homo sapiens transmembrane inner ear
           protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 16  WYFFSLISVAVLSVIILLCCL 78
           W+   + S+ VLS+II LCC+
Sbjct: 57  WHVVGIFSLFVLSIIITLCCV 77


>AY081842-1|AAL89820.1|  155|Homo sapiens transmembrane inner ear
           protein protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 16  WYFFSLISVAVLSVIILLCCL 78
           W+   + S+ VLS+II LCC+
Sbjct: 57  WHVVGIFSLFVLSIIITLCCV 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,846,339
Number of Sequences: 237096
Number of extensions: 983349
Number of successful extensions: 1756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)