Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D06
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78540-1|CAB01736.1|  409|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z49071-7|CAA88880.2|  211|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY275709-1|AAP31908.1|  211|Caenorhabditis elegans cell junction...    27   8.6  
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z78540-1|CAB01736.1|  409|Caenorhabditis elegans Hypothetical
           protein C33G3.3 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 25  FSLISVAVLSVIILLCCLQ*SRAIPP 102
           F+LIS+   + II+ CC+Q  R +PP
Sbjct: 314 FNLISIT--TSIIIFCCMQVKRTLPP 337


>Z49071-7|CAA88880.2|  211|Caenorhabditis elegans Hypothetical
           protein T22C8.8 protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 282 LIITIGRKRIDACLAQPFRSGLTHVPVTNWGNSCTRFDSTTHTACVPGRPSSITC 446
           L+I +G   +  C     ++G      T     CT  +  TH A  PG P+  +C
Sbjct: 26  LVIAVGLMIVALCSTSWLKTGSFR---TGLFKECTSTNEPTHAAPFPGAPAPGSC 77


>Z48783-6|CAA88700.1|  371|Caenorhabditis elegans Hypothetical
           protein F33H1.5 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 233 VLYCKLSC*KSITVCVIDNYYRTKTH*CLSCAALPQRPNARSSHQ 367
           + Y  + C   + +  I +Y+R KT   L+  AL   P  ++SHQ
Sbjct: 215 IFYMTMPC---VPIYFIIHYFRDKTLSTLASNALSMSPATKASHQ 256


>AY275709-1|AAP31908.1|  211|Caenorhabditis elegans cell junction
           protein VAB-9 protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 282 LIITIGRKRIDACLAQPFRSGLTHVPVTNWGNSCTRFDSTTHTACVPGRPSSITC 446
           L+I +G   +  C     ++G      T     CT  +  TH A  PG P+  +C
Sbjct: 26  LVIAVGLMIVALCSTSWLKTGSFR---TGLFKECTSTNEPTHAAPFPGAPAPGSC 77


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 377 VSPVGDWNVR*AAAEGLRKTSINAFSSDSNYQ 282
           V+PV + NVR   AE L K   N  S D N+Q
Sbjct: 160 VAPVHNTNVRFVGAEILIKYGPNVVSIDPNFQ 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,455
Number of Sequences: 27780
Number of extensions: 170165
Number of successful extensions: 382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)