Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D06
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    29   1.5  
At3g61800.1 68416.m06935 expressed protein                             27   4.5  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    27   6.0  
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica...    27   7.9  

>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
            subunit, putative similar to SP|O48653 DNA polymerase
            alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1492

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 355  TCVRPLRKGCARQASMRFRPIVIINYADCNRFLTRKFTV*NRTSNLTELCYLI 197
            +C    R    R    R R  V  NY +CN  L RK+T  +    L+  C+++
Sbjct: 1386 SCKHTTRSPNFRLLGERERGTVCPNYPNCNGTLLRKYTEADLYKQLSYFCHIL 1438


>At3g61800.1 68416.m06935 expressed protein 
          Length = 664

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 345 LTHVPVTNWGNSCTRFDSTT 404
           ++  PV NWG+  T ++STT
Sbjct: 408 ISEAPVMNWGSQLTNWESTT 427


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 339  SGLTHVPVTNWGNSCTRFDSTTHTA 413
            SGL+++P+ NW    T+F++ T TA
Sbjct: 1004 SGLSNIPIANWD---TKFETGTKTA 1025


>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 440

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 331 GCARQASMRFRPIVIINYADCNRFLTR 251
           G  R+   R   +V+ NY DCN  L R
Sbjct: 55  GAKRKRKSRSTGMVVFNYKDCNNTLQR 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,642,364
Number of Sequences: 28952
Number of extensions: 148418
Number of successful extensions: 335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)