Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D05
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    30   0.53 
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   1.6  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -1

Query: 176 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTLVPNSCSP 9
           ++ + P S H  + PP VQ    PPC    T    +     + P C  T  P +  P
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYTPAPPATQP 242


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -1

Query: 176 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTLVPNSCSP 9
           ++ I PV  H  + PP  Q    PPC    T    +     + P C  T  P + +P
Sbjct: 263 YRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCVYTPAPPATAP 319


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 127 CSPASYHHA*YQTQYTHFLKIYSEVIRIVLLPSCRIP 17
           C   S+  A Y   + HFL  Y  + R   L SC IP
Sbjct: 106 CLRGSFIFATYPILHAHFLYRYMVLFRSTFLSSCFIP 142


>Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical
           protein F13D2.3 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 300 SWLALVLRLLPWWPFSSVV*HY 365
           S++ ++ RL+P+WPF +V+ HY
Sbjct: 229 SYVRMMSRLIPFWPF-TVLNHY 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,204,791
Number of Sequences: 27780
Number of extensions: 141308
Number of successful extensions: 329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)