Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D05
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52410.2 68418.m06502 expressed protein                             30   0.65 
At5g52410.1 68418.m06503 expressed protein                             30   0.65 
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex...    28   2.0  
At1g78940.1 68414.m09203 protein kinase family protein contains ...    27   4.6  
At1g24706.1 68414.m03104 expressed protein                             27   6.1  
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-...    26   8.0  

>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 143 EDEGK--LELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 292
           EDE +  L L + + +E++A    +   K E    RE A+  EEARG+ +KY
Sbjct: 572 EDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 623


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 143 EDEGK--LELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 292
           EDE +  L L + + +E++A    +   K E    RE A+  EEARG+ +KY
Sbjct: 321 EDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 372


>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510
          Length = 1075

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 97  YQTQYTHFLKIYSEVIRIVLLPSCRIPAARGS 2
           Y  QY     I+   +RI+L PS +IP A  S
Sbjct: 270 YNVQYVKMYTIFIGQLRIILPPSTKIPEAYSS 301


>At1g78940.1 68414.m09203 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 680

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 200 GENKLNVKFEPGELREAARTFEEARGKIKKYT 295
           G N+L +KF   +    + TF E  G+   Y+
Sbjct: 215 GSNRLGIKFSDPDFLNESSTFSEESGRTSSYS 246


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 149  HLHSPPLVQPCKLPPCIIPNTIHA 78
            H HS  L  P  LPP IIP+++ A
Sbjct: 1571 HFHSQGLPPPPPLPPNIIPHSMAA 1594


>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
           / HD-ZIP transcription factor 13 identical to homeobox
           gene 13 protein (GP:12325190) [Arabidopsis thaliana]
          Length = 294

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 149 HLHSPPLVQPCKLPPCIIPNTIHAFSQNL 63
           H H  P + P  LP C +P  +H F+  L
Sbjct: 24  HPHQSPSLAPL-LPSCSLPQDLHGFASFL 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,877
Number of Sequences: 28952
Number of extensions: 133244
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)