Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D04
         (445 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.080
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.080
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   4.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   6.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.9  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    20   9.2  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    20   9.2  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    20   9.2  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    20   9.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   9.2  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.080
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 318 NLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKST 440
           NL K       K     +   +  PGE+L ++G +G GK+T
Sbjct: 79  NLIKRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTT 119


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.080
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 318 NLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKST 440
           NL K       K     +   +  PGE+L ++G +G GK+T
Sbjct: 79  NLIKRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTT 119


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 120 LL*RYG*VYLFPHYLVFGTSLLIKERTLAILCL 22
           L+ R+  ++     L+FG S L+  +T+ I+C+
Sbjct: 588 LVTRFNEIFGLGLLLMFGVSFLLITQTIFIICV 620



 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 78  LVFGTSLLIKERTLAILCL 22
           L+FG S L+  +T+  LC+
Sbjct: 878 LMFGISFLLVTQTIFALCV 896


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
 Frame = +3

Query: 117 VNADRCKPKRCRQ--ECKK-------SCPVVRMGKLCIEVTPND 221
           +N D CKP  C+    C         SCP   +G +C E+  +D
Sbjct: 221 LNVDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLGYIC-EINVDD 263


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 292 RSPSSIFHQIWRNTPLIVIP 351
           RSP+  FH   RNT +I IP
Sbjct: 638 RSPT--FHLTVRNTSIIKIP 655


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/12 (50%), Positives = 6/12 (50%)
 Frame = -3

Query: 407 PKHFSRTWNW*P 372
           P H    WNW P
Sbjct: 330 PAHAGNGWNWGP 341


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 138 PKRCRQECKKSCPVVRMGKLCIEVTPNDKIATIS 239
           PK   Q   +     ++G   + +TPN KI  +S
Sbjct: 96  PKHVDQYLLEQLVCEQLGGFLLILTPNGKIVFVS 129


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 117 VNADRCKPKRCR 152
           +N D C P  CR
Sbjct: 105 INTDDCSPNPCR 116


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 272 YTNTAPNTQFFRDGRYFIIGCYFDAQFAHTHNWAT 168
           Y+  A   QF R   Y++I  Y  +      +W +
Sbjct: 54  YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVS 88


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 219 HWVLLRCTVCPYA 181
           H +  +CT+CP A
Sbjct: 4   HTLPCKCTICPKA 16


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 140 WFATIRIYYSDTGKF 96
           +FA+  IY  D GKF
Sbjct: 27  YFASWTIYRPDNGKF 41


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 140 WFATIRIYYSDTGKF 96
           +FA+  IY  D GKF
Sbjct: 27  YFASWTIYRPDNGKF 41


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 240 EELCIGCGICVKKCPFDAIT 299
           EELC+ CG       ++A+T
Sbjct: 185 EELCLVCGDRASGYHYNALT 204


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 11  TRERRQSIANVRSFISSDVPK 73
           T E +Q +    +F+S  +PK
Sbjct: 299 TMEEKQELYEFSNFVSQHLPK 319


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,338
Number of Sequences: 336
Number of extensions: 2663
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)