Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D04
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 215 1e-56
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 192 1e-49
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 35 0.034
06_03_0179 - 17604561-17606435 31 0.55
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 31 0.55
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 30 0.73
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 30 0.73
07_01_1181 + 11203073-11203604,11204124-11204143 30 0.96
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 30 0.96
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 29 1.3
12_02_0038 - 12630564-12630580,12630789-12631260 29 1.7
09_02_0068 - 3832858-3833228,3835773-3836223 29 1.7
09_01_0131 - 1966406-1966425,1967469-1967901 29 1.7
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828... 29 1.7
08_02_0669 + 19868149-19870179 29 2.2
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 29 2.2
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481... 29 2.2
01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148... 28 2.9
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 28 3.9
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 27 5.1
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 27 5.1
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 6.8
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 27 6.8
06_03_0710 + 23792138-23792293,23792974-23793257,23794344-237944... 27 6.8
06_01_0602 - 4342333-4342790,4342899-4345623 27 6.8
02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,499... 27 6.8
02_01_0670 - 4976658-4978037,4978128-4979015,4982590-4983130,498... 27 6.8
01_05_0703 - 24404580-24406373 27 6.8
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 27 9.0
10_06_0124 + 11013346-11013474,11013879-11013939,11014751-110148... 27 9.0
07_03_0552 + 19383475-19383559,19383807-19385129,19385211-19385299 27 9.0
06_01_0016 + 184804-185025,185121-185237,185324-185737,185827-18... 27 9.0
05_06_0167 - 26104527-26104567,26105130-26105226,26105377-261054... 27 9.0
02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020... 27 9.0
02_02_0025 + 6183328-6186127,6186265-6186623 27 9.0
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 27 9.0
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 215 bits (525), Expect = 1e-56
Identities = 94/117 (80%), Positives = 106/117 (90%)
Frame = +3
Query: 93 DKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICV 272
++LTRIAIV+ D+CKPK+CRQECKKSCPVV+ GKLCIEVTP K+A ISEELCIGCGICV
Sbjct: 3 ERLTRIAIVSEDKCKPKKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICV 62
Query: 273 KKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTA 443
KKCPFDAI IIN+P +LEK TTHRY N+FKLHRLP+PRPG+VLGLVG NGIGKSTA
Sbjct: 63 KKCPFDAIEIINLPKDLEKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTA 119
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 192 bits (467), Expect = 1e-49
Identities = 81/121 (66%), Positives = 100/121 (82%)
Frame = +3
Query: 81 NEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGC 260
+ + + +RIA+V DRC+P +C Q+C+K CPV G+ CIEVTP+ +++ ISEELCIGC
Sbjct: 3 SSSSGRSSRIAVVTEDRCRPSKCGQQCRKRCPVNATGRQCIEVTPSSRVSLISEELCIGC 62
Query: 261 GICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKST 440
GICVK CPFDAI IIN+PS+L+K TTHRY NSFKLHRLP+PRPG+VLGLVG NGIGKST
Sbjct: 63 GICVKVCPFDAIQIINLPSDLDKETTHRYGPNSFKLHRLPVPRPGQVLGLVGTNGIGKST 122
Query: 441 A 443
A
Sbjct: 123 A 123
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 34.7 bits (76), Expect = 0.034
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Frame = +3
Query: 105 RIAIVNADRCKPKRCRQECKKSCPV--VRMGKLCIEVTPNDKIATISE-------ELCIG 257
R A + + C P C + C+K CP + + ++ IE + + + E C G
Sbjct: 119 RKAEFDPEDCPPD-CSKPCEKVCPADAILLERVMIEEEHSQSDPSCGKLEGGVITERCYG 177
Query: 258 CGICVKKCPFDAI 296
CG C+ CP+D I
Sbjct: 178 CGRCLSVCPYDRI 190
>06_03_0179 - 17604561-17606435
Length = 624
Score = 30.7 bits (66), Expect = 0.55
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGE+L +VG +G GKST
Sbjct: 87 RPGEILAVVGPSGAGKST 104
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 30.7 bits (66), Expect = 0.55
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +3
Query: 297 TIINIPSNLE-KHTTHRYSKNS----FKLHRLPIPRPGEVLGLVGQNGIGKSTA 443
T+ N+ N++ +H + +Y F L IP G+ + LVG++G GKSTA
Sbjct: 1023 TLANVKGNIDFRHVSFKYPTRPDVQIFSDFTLHIPS-GKTVALVGESGSGKSTA 1075
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 30.3 bits (65), Expect = 0.73
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGEVL ++G +G GKST
Sbjct: 133 RPGEVLAIMGPSGCGKST 150
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 30.3 bits (65), Expect = 0.73
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGEVL ++G +G GKST
Sbjct: 128 RPGEVLAIMGPSGCGKST 145
>07_01_1181 + 11203073-11203604,11204124-11204143
Length = 183
Score = 29.9 bits (64), Expect = 0.96
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGEVL L+G +G GK+T
Sbjct: 154 RPGEVLALMGPSGCGKTT 171
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 29.9 bits (64), Expect = 0.96
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 240 EELCIGCGICVKKCPFDAITI 302
EE CI C +C CP AITI
Sbjct: 104 EERCIACKLCEAICPAQAITI 124
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 249 CIGCGICVKKCPFDAI 296
CI CG C + CP DAI
Sbjct: 146 CIYCGFCQEACPVDAI 161
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGEVL ++G +G GKST
Sbjct: 67 RPGEVLAVLGPSGSGKST 84
>12_02_0038 - 12630564-12630580,12630789-12631260
Length = 162
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGEVL ++G +G GK+T
Sbjct: 134 RPGEVLAIMGPSGCGKTT 151
>09_02_0068 - 3832858-3833228,3835773-3836223
Length = 273
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGEVL ++G +G GK+T
Sbjct: 127 RPGEVLAIMGPSGCGKTT 144
>09_01_0131 - 1966406-1966425,1967469-1967901
Length = 150
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGEVL ++G +G GK+T
Sbjct: 121 RPGEVLAIMGPSGCGKTT 138
>05_07_0003 + 26981956-26982190,26982258-26982318,26982739-26982833,
26983304-26983479,26983738-26983959,26984041-26984279,
26984786-26985311,26985407-26985680,26985759-26986410,
26986508-26986736,26986841-26987107,26987180-26987443,
26987526-26988194
Length = 1302
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +3
Query: 288 DAITIINIPSNLE-KHTTHRY-SKNSFKLHR---LPIPRPGEVLGLVGQNGIGKST 440
D + + N+ LE H Y S+ ++ R L IP G+++ LVG++G GKST
Sbjct: 1040 DGMVLANVAGELELHHVCFSYPSRPDIQIFRNLSLRIPS-GKMVALVGESGCGKST 1094
>08_02_0669 + 19868149-19870179
Length = 676
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 90 TDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGI 266
TD +T DR KR + ++CPV +V PN + I E+L + G+
Sbjct: 283 TDPVTLATGQTYDRASIKRWVKSGCRTCPVTGEKLRSADVVPNVAVRGIVEQLLLSSGV 341
>05_07_0004 + 26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 28.7 bits (61), Expect = 2.2
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 288 DAITIINIPSNLE-KHTTHRYSKNS----FKLHRLPIPRPGEVLGLVGQNGIGKSTA 443
+ +T+ + ++E H + RY F L IP G+ + LVGQ+G GKSTA
Sbjct: 959 EGLTLELVKGDIEFTHISFRYPSRPDVQIFSDFTLSIPS-GKTVALVGQSGSGKSTA 1014
>03_02_0898 -
12246747-12246833,12247425-12247601,12248054-12248176,
12248545-12248766,12249556-12249606,12249712-12249987
Length = 311
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
R GE+ L+GQNG GKST
Sbjct: 89 REGEIHALMGQNGSGKST 106
>01_02_0042 - 10513799-10514152,10514252-10514545,10514630-10514893,
10515019-10515285,10515363-10516207,10516311-10516584,
10516694-10517219,10518009-10518247,10518370-10518591,
10518689-10518864,10518962-10519358
Length = 1285
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Frame = +3
Query: 294 ITIINIPSNLE-KHTTHRY-SKNSFKLHR---LPIPRPGEVLGLVGQNGIGKSTA 443
+T+ + N+E +H + RY ++ ++ R L I G+ + LVG++G GKSTA
Sbjct: 1032 VTVETLHGNIEFQHVSFRYPTRPDVEIFRDLCLTI-HSGKTVALVGESGSGKSTA 1085
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 27.9 bits (59), Expect = 3.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 381 IPRPGEVLGLVGQNGIGKST 440
+ RPGE+L ++G +G GK+T
Sbjct: 155 VVRPGEMLAMLGPSGSGKTT 174
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 354 NSFKLHRLPIPRP-GEVLGLVGQNGIGKST 440
+ F + L + P GE LG++G NG GKS+
Sbjct: 645 DKFAVRGLSLALPYGECLGILGPNGAGKSS 674
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGEVL L+G +G GK+T
Sbjct: 199 PGEVLALMGPSGSGKTT 215
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 259 HPIHSSSEMVAILSL-GVTSMHSLPIRTTGQLFLHSCRH 146
HP S+ V+ S+ G S P+ TTG+L LH+ H
Sbjct: 153 HPNMPSAGSVSSSSVQGEVDNESSPVHTTGELSLHANTH 191
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 342 RYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKST 440
R K + L IP G+V+ LVG +G GKST
Sbjct: 369 RVDKPILRSFSLSIPA-GKVVALVGSSGCGKST 400
>06_03_0710 +
23792138-23792293,23792974-23793257,23794344-23794499,
23795318-23795804,23795864-23796181,23796773-23797165,
23797752-23798021
Length = 687
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGE+L L+G +G GK+T
Sbjct: 100 PGEILALMGPSGSGKTT 116
>06_01_0602 - 4342333-4342790,4342899-4345623
Length = 1060
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 298 PSSIFHQIWRNTPLIVIPRILSNFTGYQFHVLE 396
P+ +F +W N + IPR LSN T ++ +LE
Sbjct: 239 PNLMFLVLWANNLVGEIPRSLSNSTNLKWLLLE 271
>02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,
4996532-4997168,4997266-4997320,4997439-4997675
Length = 1245
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 360 FKLHRLPIPRPGEVLGLVGQNGIGKST 440
FK L I +PG+ LVGQ+G GKST
Sbjct: 1015 FKGFTLSI-QPGKSTALVGQSGSGKST 1040
>02_01_0670 - 4976658-4978037,4978128-4979015,4982590-4983130,
4983209-4983845,4983962-4983992,4984094-4984324
Length = 1235
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 360 FKLHRLPIPRPGEVLGLVGQNGIGKST 440
FK L I +PG+ LVGQ+G GKST
Sbjct: 1005 FKGFTLSI-QPGKSTALVGQSGSGKST 1030
>01_05_0703 - 24404580-24406373
Length = 597
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGEV+ +VG +G GK+T
Sbjct: 61 PGEVVAIVGPSGAGKTT 77
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 393 GEVLGLVGQNGIGKST 440
GE +GLVG NG GK+T
Sbjct: 116 GEKVGLVGVNGAGKTT 131
>10_06_0124 +
11013346-11013474,11013879-11013939,11014751-11014838,
11017619-11017806,11017849-11018112,11018188-11018262,
11018263-11019698
Length = 746
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 299 GDRVKGAFLYTNTAPNTQFFRDGRYFI 219
GD K LY P T++ +D + FI
Sbjct: 229 GDAAKACLLYLGMFPGTRYLKDTKIFI 255
>07_03_0552 + 19383475-19383559,19383807-19385129,19385211-19385299
Length = 498
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 190 PIRTTGQLFLHSCRHLFGLQRSA 122
PI T LF+H C L G RSA
Sbjct: 469 PILTVFDLFIHVCLELEGFSRSA 491
>06_01_0016 +
184804-185025,185121-185237,185324-185737,185827-186888
Length = 604
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +3
Query: 282 PFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQ 419
P D + I L+ HT S LH + I GE G V Q
Sbjct: 147 PSDPALLTRISHKLQLHTMADMKNESIALHNMVISTAGEPDGCVDQ 192
>05_06_0167 -
26104527-26104567,26105130-26105226,26105377-26105415,
26105628-26105678,26105978-26106059,26106222-26106282,
26106380-26106509,26106630-26106758,26107057-26107314
Length = 295
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 213 PNDKIATISEELCIGCGICVKKCP 284
P D++ + E CIGC C CP
Sbjct: 160 PKDQVF-VDEFTCIGCKYCANVCP 182
>02_05_1217 +
34999631-34999945,35000670-35000835,35001908-35002005,
35002245-35002319,35002413-35002481,35002552-35002637,
35002710-35002827,35003575-35003902,35003995-35005682,
35005822-35005881,35005953-35006027,35006105-35006197,
35006298-35006372,35006464-35006532,35006614-35006682,
35006994-35007113
Length = 1167
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 147 CRQECKKSCPVVRMGKLCIEVTPNDKIATISEELC 251
C +E ++C V R+ IE NDK A + C
Sbjct: 238 CIKEMLRNCKVARILPKIIEFAKNDKSAVLRARCC 272
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +3
Query: 156 ECKKSC--PVVRMGKLCIEVTPNDKI 227
E +SC P+V++G LC ++P D++
Sbjct: 1007 EIMQSCIIPMVKLGLLCSSISPKDRL 1032
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 366 LHRLPIPRPGEVLGLVGQNGIGKS 437
LHR P+ RPG V+ + G + GKS
Sbjct: 429 LHRAPL-RPGNVVEIAGPSNSGKS 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,668
Number of Sequences: 37544
Number of extensions: 277269
Number of successful extensions: 954
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -