Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D04
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 229 8e-61
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.035
SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09) 31 0.57
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_58362| Best HMM Match : Fer4 (HMM E-Value=0.00099) 29 1.7
SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06) 29 1.7
SB_38838| Best HMM Match : ABC_tran (HMM E-Value=0.24) 29 2.3
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 29 2.3
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_40033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24) 28 3.0
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 28 3.0
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_58935| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06) 27 5.3
SB_51546| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37) 27 5.3
SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 27 7.0
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41) 27 9.2
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0) 27 9.2
SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043) 27 9.2
SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41) 27 9.2
SB_50467| Best HMM Match : SH3_1 (HMM E-Value=1e-12) 27 9.2
SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 229 bits (560), Expect = 8e-61
Identities = 103/127 (81%), Positives = 111/127 (87%)
Frame = +3
Query: 63 MSRKRDNEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISE 242
M+ + D +KLTRIAIV+ D+CKPKRCRQECKKSCPVVRMGKLCIEVTP K+A ISE
Sbjct: 1 MAFRADQSTQEKLTRIAIVSTDKCKPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISE 60
Query: 243 ELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQN 422
LCIGCGIC KKCPF+AITIIN+PSNLEK TTHRY NSFKLHRLPIPRPGEVLGLVG N
Sbjct: 61 PLCIGCGICAKKCPFEAITIINLPSNLEKDTTHRYGPNSFKLHRLPIPRPGEVLGLVGTN 120
Query: 423 GIGKSTA 443
GIGKSTA
Sbjct: 121 GIGKSTA 127
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 34.7 bits (76), Expect = 0.035
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 138 PKRCRQECKKSCPVVRMGKLCIEVT-PNDKIATISEELCIGCGICVKKCPFDAITIINIP 314
PK C QECK CPV K C T P+ K + E I C+ CP ++ +P
Sbjct: 2182 PKICAQECKPYCPV----KCCESSTAPSTKEYSTDECPEICSHNCLPFCPVKCCAVV-VP 2236
Query: 315 SNLEKHTTH 341
SN + TH
Sbjct: 2237 SN-QAEATH 2244
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 138 PKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKC 281
PK C C CPV+ C +P + TI CI C +KC
Sbjct: 1800 PKSCETTCTPDCPVM----CCKNSSPATECPTICASKCI--SKCPEKC 1841
>SB_6133| Best HMM Match : ABC_tran (HMM E-Value=9e-09)
Length = 562
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGEV GL+G NG GK+T
Sbjct: 318 PGEVFGLLGPNGAGKTT 334
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
+PGE +G+VG+ G GKST
Sbjct: 1357 QPGEKIGIVGRTGAGKST 1374
>SB_58362| Best HMM Match : Fer4 (HMM E-Value=0.00099)
Length = 116
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 225 IATISEELCIGCGICVKKC 281
+A I EE+CI CG C C
Sbjct: 72 VALIDEEMCINCGKCYMTC 90
>SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)
Length = 240
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 321 LEKHTTHRYSKNSFKLHRLPIP-RPGEVLGLVGQNGIGKST 440
L+ H+Y S L L + GEV L+G+NG+GK+T
Sbjct: 84 LQVQQLHQYYGGSHILRGLSFDVKVGEVTCLLGRNGVGKTT 124
>SB_38838| Best HMM Match : ABC_tran (HMM E-Value=0.24)
Length = 169
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 336 THRYSKNSFKLHRLPIPR--PGEVLGLVGQNGIGKST 440
T RY ++ L+ R PGE +GLVG +G GK+T
Sbjct: 72 TFRYGRHEAPLYDRFSARIAPGERVGLVGHSGSGKTT 108
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGE +G+VG+ G GKS+
Sbjct: 1360 RPGERVGIVGKTGAGKSS 1377
>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 267 KYRTQYTVLQRWSLFYHWVLLRCTVCPYAQLGNSSC 160
KY Q + QR LFY + RC C Y N C
Sbjct: 505 KYADQLSEYQRKDLFYSVYIKRCPHCRYPIEKNGGC 540
>SB_40033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 224 FIIGCYFDAQFAHTHNWATLLAFLSTSFWFATIRIYYSDTGKFI 93
F+I CY+ F T NW+ L+A + + + + +FI
Sbjct: 38 FVIPCYYLCNFHVTCNWSVLIAVYNFLLYASVTNVCLITADRFI 81
>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
Length = 453
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 132 CKPKRCRQECKKSC--PVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPF 287
C+ K ECKK C P V + C + K + + E+C C K CP+
Sbjct: 55 CQNKCTHSECKKKCGEPCVPCAEPCAWKCRHYKCSKLCGEIC-DRPRCDKPCPY 107
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
RPGE+L L+G +G GK+T
Sbjct: 33 RPGEMLALMGPSGSGKTT 50
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +3
Query: 306 NIPSNLEKHTTHRY--SKNSFK-LHRLPIP-RPGEVLGLVGQNGIGKST 440
N+ ++ + H Y S+N K L+ L + R G+ + LVG++G GKST
Sbjct: 647 NVTGDVTFNDIHFYYPSRNEVKVLNGLSLTVRSGQTVALVGESGCGKST 695
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
+PGE +G+VG+ G GKS+
Sbjct: 926 QPGEKIGIVGRTGAGKSS 943
>SB_58935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 330 HTTHRYSKNSFKLHRLP-IPRPGEVLGLVGQNGIGKST 440
+ T R+ N L L + RP V+G +G +GKST
Sbjct: 36 YATERFITNDDALKELSKLSRPVRVIGAIGDARVGKST 73
>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
Length = 606
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 276 SLHKYRTQYTVLQRWSLFYHWVLLRCTVCPYAQLGNS 166
SLHK +++ T L R S+ Y L VC LG +
Sbjct: 296 SLHKAKSKMTWLDRASVQYGGTFLNSEVCEVKSLGKA 332
>SB_51546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 126 DRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIAT 233
DR K RC E K CP+ R +E +D AT
Sbjct: 339 DRGKRSRCHLEIKARCPIGRHVARLVENKKSDNEAT 374
>SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37)
Length = 226
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 396 EVLGLVGQNGIGKST 440
E++GLVG+NG GK+T
Sbjct: 2 EIIGLVGENGNGKTT 16
>SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGEV+ L+G +G GKST
Sbjct: 46 PGEVVCLIGPSGSGKST 62
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 132 CKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATIS 239
C P++ ++ C +++G +CI +TPN A +S
Sbjct: 1101 CVPEQSLKKYNLQCHPLKVGDVCIFLTPNLAQAVLS 1136
>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
Length = 336
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PG+ L LVG +G GKST
Sbjct: 167 PGQTLALVGNSGGGKST 183
>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
Length = 882
Score = 26.6 bits (56), Expect = 9.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 144 RCRQECKKSCPVVRMGKLCIEVTP 215
+C EC ++ P + +G LC + P
Sbjct: 570 KCTDECHETFPSMELGDLCSDTNP 593
>SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043)
Length = 532
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 319 FDGILMMVIASKGHFFTQIPHPIHSSSEMVAILSLGVTSM 200
F G L +I + G F T IP P H + +L LG +S+
Sbjct: 147 FSGFLETLIPTLGRFNTPIPPPPHGGP--LEVLPLGSSSI 184
>SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)
Length = 474
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 393 GEVLGLVGQNGIGKST 440
GE +G+VG+NG GKS+
Sbjct: 93 GEKIGIVGRNGSGKSS 108
>SB_50467| Best HMM Match : SH3_1 (HMM E-Value=1e-12)
Length = 132
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 282 PFDAITIINIPSNLEKHT----THRYSKNSFKLHRLPIPRPGEV 401
P+ +T++++ NLE+HT R S L RL + + GE+
Sbjct: 87 PYVQVTLLDLQDNLEEHTLWMAVDRSSNEPCALIRLQLVKTGEL 130
>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PG+V+ LVG +G GKST
Sbjct: 379 PGQVVALVGPSGGGKST 395
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 331 CFSKFDGILMMVIASKGHFFTQIPHPIHSSSEMVAILSLGVTSMHSLPIRTTGQLFL 161
CFS+ GIL ++I +++ P P H + + +S S P + G LFL
Sbjct: 873 CFSR--GILFLIIIITFMLWSRHPSPPHHHHPHALVAASSSSSSSSPPCFSRGILFL 927
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 393 GEVLGLVGQNGIGKST 440
G GLVG+NGIGK+T
Sbjct: 232 GRRYGLVGRNGIGKTT 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,152
Number of Sequences: 59808
Number of extensions: 335906
Number of successful extensions: 1087
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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