Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D04
(445 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 186 8e-48
U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical pr... 33 0.12
AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH oxidored... 33 0.12
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical p... 29 1.5
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 29 2.0
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p... 28 2.7
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr... 28 2.7
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ... 28 2.7
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport... 28 2.7
Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 27 4.6
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 27 4.6
U39678-6|AAK39206.1| 208|Caenorhabditis elegans Hypothetical pr... 27 4.6
AF125954-5|AAD14708.2| 338|Caenorhabditis elegans Seven tm rece... 27 4.6
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 27 6.1
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 27 6.1
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 27 6.1
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 27 6.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 6.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 6.1
AF067213-1|AAC17000.2| 462|Caenorhabditis elegans Hypothetical ... 27 6.1
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr... 27 8.1
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 27 8.1
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 186 bits (452), Expect = 8e-48
Identities = 90/130 (69%), Positives = 97/130 (74%), Gaps = 3/130 (2%)
Frame = +3
Query: 63 MSRKRD---NEETDKLTRIAIVNADRCKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIAT 233
MSRK N ETD RIAIV DRCKPK C CK++CPV R GK CI V I+
Sbjct: 1 MSRKGPLIKNNETDVPLRIAIVEKDRCKPKNCGLACKRACPVNRQGKQCIVVEATSTISQ 60
Query: 234 ISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLV 413
ISE LCIGCGICVKKCP+DAI IIN+P+NL TTHRYS+NSFKLHRLP PR GEVLGLV
Sbjct: 61 ISEILCIGCGICVKKCPYDAIKIINLPANLANETTHRYSQNSFKLHRLPTPRCGEVLGLV 120
Query: 414 GQNGIGKSTA 443
G NGIGKSTA
Sbjct: 121 GTNGIGKSTA 130
>U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical
protein T20H4.5 protein.
Length = 212
Score = 32.7 bits (71), Expect = 0.12
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +3
Query: 159 CKKSCPVVRMGKLCIEVTPNDKIATISEEL----CIGCGICVKKCPFDAITI-INIPSNL 323
C+ CP + + E P+ T ++ CI CG+C + CP DAI N +
Sbjct: 119 CEAICPAQAI-TIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEYST 177
Query: 324 EKHTTHRYSKNSFKLH 371
E H Y+K L+
Sbjct: 178 ETHEELLYNKEKLLLN 193
Score = 29.9 bits (64), Expect = 0.87
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 240 EELCIGCGICVKKCPFDAITI 302
EE CI C +C CP AITI
Sbjct: 110 EERCIACKLCEAICPAQAITI 130
>AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH
oxidoreductase complex I 23.8kDa subunit protein.
Length = 212
Score = 32.7 bits (71), Expect = 0.12
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +3
Query: 159 CKKSCPVVRMGKLCIEVTPNDKIATISEEL----CIGCGICVKKCPFDAITI-INIPSNL 323
C+ CP + + E P+ T ++ CI CG+C + CP DAI N +
Sbjct: 119 CEAICPAQAI-TIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEYST 177
Query: 324 EKHTTHRYSKNSFKLH 371
E H Y+K L+
Sbjct: 178 ETHEELLYNKEKLLLN 193
Score = 29.9 bits (64), Expect = 0.87
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 240 EELCIGCGICVKKCPFDAITI 302
EE CI C +C CP AITI
Sbjct: 110 EERCIACKLCEAICPAQAITI 130
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical protein
C25F6.3 protein.
Length = 1059
Score = 29.9 bits (64), Expect = 0.87
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 78 DNEETDKLTRIAIVNADRC-KPKRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCI 254
DN+E ++AI++ D C +C C S G I P ++E+ C
Sbjct: 950 DNQEQ----KVAIIDDDMCINCGKCYMTCNDS------GYQAITFDPVTHQPHVTEDDCT 999
Query: 255 GCGICVKKCP 284
GC +C CP
Sbjct: 1000 GCTLCYSVCP 1009
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +3
Query: 183 RMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINI-PSNLEKHTT 338
R+G K+A I +++CI CG C C I P + H T
Sbjct: 942 RIGPYVTLDNQEQKVAIIDDDMCINCGKCYMTCNDSGYQAITFDPVTHQPHVT 994
>Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical
protein C16C10.12 protein.
Length = 610
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Frame = +3
Query: 288 DAITIINIP-SNLEKHTTHR-YSKNSFKL-HRLP-IPRPGEVLGLVGQNGIGKST 440
+ +T I + N+E T + +SK +L +R+ I +PGE++ L+G +G GK+T
Sbjct: 28 EVVTPITVTWENIEVKTRKKLFSKKQKQLLNRVSGIAKPGEMVALMGASGAGKTT 82
>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
protein F42E11.1 protein.
Length = 1266
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKSTA 443
PGE + LVG +G GKST+
Sbjct: 401 PGETIALVGHSGCGKSTS 418
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 381 IPRPGEVLGLVGQNGIGKST 440
+ RPGEV ++G +G GK+T
Sbjct: 88 VARPGEVTAIIGPSGAGKTT 107
>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical protein
C47A10.1 protein.
Length = 1294
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
+PG+ L LVG +G GKST
Sbjct: 1056 KPGQTLALVGPSGCGKST 1073
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
+PG+ + LVG +G GKST
Sbjct: 409 QPGQTVALVGSSGCGKST 426
>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
+PG+ L LVG +G GKST
Sbjct: 1056 KPGQTLALVGPSGCGKST 1073
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 387 RPGEVLGLVGQNGIGKST 440
+PG+ + LVG +G GKST
Sbjct: 409 QPGQTVALVGSSGCGKST 426
>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
protein ZK455.7 protein.
Length = 1268
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKSTA 443
PGE + LVG +G GKST+
Sbjct: 403 PGETVALVGHSGCGKSTS 420
>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
protein ZK455.7 protein.
Length = 1268
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKSTA 443
PGE + LVG +G GKST+
Sbjct: 403 PGETVALVGHSGCGKSTS 420
>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
protein.
Length = 1254
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKSTA 443
PGE + LVG +G GKST+
Sbjct: 403 PGETVALVGHSGCGKSTS 420
>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
family protein 2 protein.
Length = 1551
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PGE GL+G NG GK+T
Sbjct: 1232 PGECFGLLGLNGAGKTT 1248
>Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical
protein C10C6.5 protein.
Length = 610
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 381 IPRPGEVLGLVGQNGIGKST 440
I +PG++L L+G +G GK+T
Sbjct: 57 IAKPGQLLALMGASGAGKTT 76
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein
K08E7.9 protein.
Length = 1321
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PG+ L LVG +G GKST
Sbjct: 1104 PGQTLALVGPSGCGKST 1120
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PG+ L LVG +G GKST
Sbjct: 1104 PGQTLALVGPSGCGKST 1120
>U39678-6|AAK39206.1| 208|Caenorhabditis elegans Hypothetical
protein C39D10.2 protein.
Length = 208
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 287 KGAFLYTNTAPNTQFFRDGRYFIIGCYFDAQFAHTHNWA 171
KG+ +++ T + FFR +YF + YF F H W+
Sbjct: 55 KGSQIHSYTILSLTFFRIFKYFFVS-YFSIFFNVFHGWS 92
>AF125954-5|AAD14708.2| 338|Caenorhabditis elegans Seven tm
receptor protein 120 protein.
Length = 338
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 303 INIPSNLEKHTTHRYSKNSFKLHR 374
+NI + +HT HR SK ++++HR
Sbjct: 223 LNIFRTVYRHTKHRKSKKNWEIHR 246
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical protein
T21E8.1b protein.
Length = 1204
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PG+ L LVG +G GKST
Sbjct: 984 PGKTLALVGPSGCGKST 1000
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.1a protein.
Length = 1263
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PG+ L LVG +G GKST
Sbjct: 1043 PGKTLALVGPSGCGKST 1059
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.2 protein.
Length = 1263
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKST 440
PG+ L LVG +G GKST
Sbjct: 1043 PGKTLALVGPSGCGKST 1059
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 132 CKPKRCRQECKKSCPVVRMGKLCIEVTPNDKIA---TISEELCIGCGICVKKC 281
C C Q+C SC + + + +++ P A + E CI CV+ C
Sbjct: 318 CVQSMCPQQCYPSCDMNCIQQYAVQMAPTPCAAQCMPLCESSCIARLSCVQTC 370
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 201 IEVTPNDKIATISEELCIGCGICVKKC 281
IEV P A ++E LC+ C + C
Sbjct: 2283 IEVLPGRSQANLNESLCVECSVSAYPC 2309
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 201 IEVTPNDKIATISEELCIGCGICVKKC 281
IEV P A ++E LC+ C + C
Sbjct: 2298 IEVLPGRSQANLNESLCVECSVSAYPC 2324
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 201 IEVTPNDKIATISEELCIGCGICVKKC 281
IEV P A ++E LC+ C + C
Sbjct: 18109 IEVLPGRSQANLNESLCVECSVSAYPC 18135
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 201 IEVTPNDKIATISEELCIGCGICVKKC 281
IEV P A ++E LC+ C + C
Sbjct: 18124 IEVLPGRSQANLNESLCVECSVSAYPC 18150
>AF067213-1|AAC17000.2| 462|Caenorhabditis elegans Hypothetical
protein T25B2.2 protein.
Length = 462
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 125 GSLQTKKMSTGMQEELPSCAYGQTVHRSNT 214
G TKK++ + +E+P+ G VHRS T
Sbjct: 416 GKTATKKVTIQVPDEIPTQPKGHFVHRSAT 445
>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
protein DH11.3 protein.
Length = 1270
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 390 PGEVLGLVGQNGIGKSTA 443
PG+ + LVG +G GKST+
Sbjct: 426 PGQTVALVGTSGCGKSTS 443
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 393 GEVLGLVGQNGIGKST 440
G GLVG+NGIGK+T
Sbjct: 204 GRRYGLVGRNGIGKTT 219
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 21 VGKVSPTFALLSAVMSRKRDNEETDKLTRIAIVNADRCK 137
VG V TFA+L+ ++ + K+T + + + CK
Sbjct: 13 VGSVVSTFAVLTVIIGLPLMHNHVQKVTTLMLTEVELCK 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,291,509
Number of Sequences: 27780
Number of extensions: 257793
Number of successful extensions: 873
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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